Locus 7710

Sequence ID X_DroMel_CAF1
Location 19,210,481 – 19,210,592
Length 111
Max. P 0.709069
window12644

overview

Window 4

Location 19,210,481 – 19,210,592
Length 111
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 85.71
Mean single sequence MFE -17.99
Consensus MFE -12.81
Energy contribution -13.31
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.75
Structure conservation index 0.71
SVM decision value 0.37
SVM RNA-class probability 0.709069
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19210481 111 - 22224390
CUCACCUCCU-----CCCAACUAUGUGCAAUUCUGCUUGCUCUGCGUAUUUUUUUUUUGCGGUUUCAUUUCGCAUUCUCGUGCCAGCAUUUUGCCUUUAAUAAUUAUUUAUGCACA
..........-----........(((((.....((((.((...(((...........(((((.......)))))....))))).))))...........((((....))))))))) ( -16.66)
>DroSec_CAF1 31784 113 - 1
CUCUCCUCCUCCUCUCCUACACAUGUGCAUUUCUGCUUGCUCUGCGUAUUU---UUUUGCGGUUUCAUUUCGCAUUCUCGUGCCAGCAUUUUGCCUUUAAUAAUUAUUUAUGCACA
.......................(((((.....((((.((...(((.....---...(((((.......)))))....))))).))))...........((((....))))))))) ( -17.90)
>DroEre_CAF1 28942 103 - 1
------CCCUCCUCUUU----UAUGUGAAAUUCAGCUUGCUCUGCGUAUUU---UUUUGCGGUUUCAUUUCGCAUUCUCGUGCCAGCAUUUUGCCUUUAAUAAUUAUUUAUGCACA
------...........----.(((((((((..((....))(((((.....---...)))))....)))))))))....((((..((.....)).....((((....)))))))). ( -16.60)
>DroYak_CAF1 29708 105 - 1
----CCCCCUCCUCUUU----UAUGUGAAAUGCUGCUUGCUGUGCGUAUUU---UUUUGCGGUUUCAUUUCGCAUUCUCGUGCCAGCAUUUUGCCUUUAAUAAUUAUUUAUGCACA
----.............----...(..((((((((......(..((.....---...(((((.......)))))....))..)))))))))..)...................... ( -20.80)
>consensus
____CCCCCUCCUCUCC____UAUGUGAAAUUCUGCUUGCUCUGCGUAUUU___UUUUGCGGUUUCAUUUCGCAUUCUCGUGCCAGCAUUUUGCCUUUAAUAAUUAUUUAUGCACA
.......................(((((......(((.((...(((...........(((((.......)))))....))))).)))............((((....))))))))) (-12.81 = -13.31 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:36 2006