| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,205,279 – 19,205,384 |
| Length | 105 |
| Max. P | 0.834395 |
| Location | 19,205,279 – 19,205,384 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 82.51 |
| Mean single sequence MFE | -28.60 |
| Consensus MFE | -19.44 |
| Energy contribution | -20.33 |
| Covariance contribution | 0.90 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.834395 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19205279 105 + 22224390 AUCUUCGGCGAUCUGAGGGCUCACA-------GCCAACAGUUCACAGCUCUACAGAAAGGGAAUAAUUUAUGCAUUUCUCGUAUAUA----UGUAUGUACAUGUAUACACUUUCCC ......((.((((((((((((...(-------((.....)))...)))))).))))..(((((............)))))(((((((----(((....))))))))))....)))) ( -26.70) >DroSec_CAF1 26688 112 + 1 AUCUUCGGCGAUCUGAGGGCUCACAGCUCACAGCUAAGAGUUUACAGCUCCACAGAAAGGGAAUAAUUUAUGCAUUUCUCGUAUAUA----UGUAUGUACAUGUAUACACUUUCCC ......((.((((((.(((((...(((((........)))))...))).)).))))..(((((............)))))(((((((----(((....))))))))))....)))) ( -29.80) >DroEre_CAF1 24253 107 + 1 AUCUCUGGCGAUCUGAGGGCUCACAGCUCAC-------AGCUCACAGUU-CACAGAAUGGGAAUAAUUUAUGCAUUUCAAGUAUAU-GGUAUGUGUGUACAUGUAUACACUUUCCC ...((((..((.(((.(((((..........-------))))).))).)-).))))..(((((((...(((((.......))))).-..)))(((((((....)))))))..)))) ( -29.30) >consensus AUCUUCGGCGAUCUGAGGGCUCACAGCUCAC_GC_AA_AGUUCACAGCUCCACAGAAAGGGAAUAAUUUAUGCAUUUCUCGUAUAUA____UGUAUGUACAUGUAUACACUUUCCC ...........((((.(((((...((((..........))))...))).)).))))..(((((.....(((((((.....(((((((......))))))))))))))....))))) (-19.44 = -20.33 + 0.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:31 2006