Locus 7705

Sequence ID X_DroMel_CAF1
Location 19,203,008 – 19,203,113
Length 105
Max. P 0.655245
window12636

overview

Window 6

Location 19,203,008 – 19,203,113
Length 105
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 83.08
Mean single sequence MFE -32.12
Consensus MFE -20.97
Energy contribution -21.28
Covariance contribution 0.31
Combinations/Pair 1.08
Mean z-score -1.79
Structure conservation index 0.65
SVM decision value 0.25
SVM RNA-class probability 0.655245
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19203008 105 + 22224390
CAAUGCGCCUCAAAUGAGCCGAGCAAUGUGUCGCGCGGCGACCUGCUUUCCGAAUCGAUAGGCGCAAAAGAAGAAGAAAAGCCG--GGAAAUCAGGAAGGCAG-------------AGGA
.......((((......((((.((........)).))))....((((((((.........(((.................))).--........)))))))))-------------))). ( -32.90)
>DroSec_CAF1 24438 100 + 1
CAAUGCGCCUCAAAUGAGCCGAGCAAUGUGUCG--CGGCGACCUGCUCUCCGAAUCGAUAGGCGCAAAAGAAGCA-AACUGCCG--GGAAAUCAGGAGGGCA---------------GGA
...(((.((((...(((.(((.(((...(((..--(.(((.((((.((........)))))))))....)..)))-...)))))--)....))).)))))))---------------... ( -33.00)
>DroEre_CAF1 22024 96 + 1
CAAUGCGCCUCAAAUGAGCCGAGCAAUGUGUCG-----CGACCUGCUUUCCGAAUCGAUAGGCGCAAAA-AAGCC-AAAAGGCU--GGAAAUCAGGAAGGCAG---------------GA
((.(((..(((....)))....))).)).....-----...(((((((((((..((....))..)....-.((((-....))))--........)))))))))---------------). ( -29.20)
>DroYak_CAF1 22093 114 + 1
CAAUGCGCCUCAAAUGAGCCGAGCAAUGUGUCG-----CGACCUGCUUUCCGAAUCGAUAGGCGCAAAAAAAGCA-AAAAGACUGUGGAUAUCAGGAGGGCAGGAAGGCAAAUGGAAGGA
.......(((...((..(((..((........)-----)..(((((((((((((((.((((..((.......)).-......)))).))).)).))))))))))..)))..))...))). ( -33.40)
>consensus
CAAUGCGCCUCAAAUGAGCCGAGCAAUGUGUCG_____CGACCUGCUUUCCGAAUCGAUAGGCGCAAAAGAAGCA_AAAAGCCG__GGAAAUCAGGAAGGCAG______________GGA
((.(((..(((....)))....))).)).((((.....))))(((((((((...((....(((.................)))....)).....)))))))))................. (-20.97 = -21.28 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:29 2006