| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,201,099 – 19,201,201 |
| Length | 102 |
| Max. P | 0.785545 |
| Location | 19,201,099 – 19,201,201 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.42 |
| Mean single sequence MFE | -29.12 |
| Consensus MFE | -20.85 |
| Energy contribution | -21.35 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.785545 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19201099 102 - 22224390 CGAUUCCCAUCCCGUGCGUUUAUUGCAAACUGUCACAAUAUUUCGAAGGAGCGAGUGCCUAAGAAAAAUUGACAGGAAGUAGUAAAUGGAAAUGCGA------------------AUGUC ..((((.(((....(.((((((((((...((((((..((.((((..(((........)))..)))).))))))))...)))))))))).).))).))------------------))... ( -26.40) >DroSec_CAF1 22655 102 - 1 CGAUUCGCAUCCCGUGCGUUUAUUGCAAACUGUCACAAUAUUUCGAAGGAGCGAGUGCCUAAGAAAAAUUGACAGGAAGUAGUAAAUGGAAAUGCGA------------------AUGUC ..((((((((....(.((((((((((...((((((..((.((((..(((........)))..)))).))))))))...)))))))))).).))))))------------------))... ( -32.70) >DroEre_CAF1 20155 110 - 1 ----UCCCGUUCCGUGCGUUUAUUGCAAACUGUCACAAUAUUUCGAAGGAGCGAGUGCCUAAGAAAAAUUGACAGGAAAUAGUAACUGGAAAUGCGAAUGCGAAAGC------GAAUGUC ----...(((((..(((((((.((((...((((((..((.((((..(((........)))..)))).))))))))......))))....)))))))...((....))------))))).. ( -26.90) >DroYak_CAF1 20149 116 - 1 ----UCCCGUUCCGUGCGUUUAUUGCAAACUGUCACAAUAUUUCGAAGGAGCGAGUGCCUAAGAAAAAUUGACAGGAAAUAGUAAAUGGAAAUGCGAAUGCGAAAGCGAAGGCGAAUGUC ----(((((((((((.(((((((((....((((((..((.((((..(((........)))..)))).))))))))....)))))))))...))).))))((....))...)).))..... ( -30.50) >consensus ____UCCCAUCCCGUGCGUUUAUUGCAAACUGUCACAAUAUUUCGAAGGAGCGAGUGCCUAAGAAAAAUUGACAGGAAAUAGUAAAUGGAAAUGCGA__________________AUGUC ....((.(((....(.((((((((((...((((((..((.((((..(((........)))..)))).))))))))...)))))))))).).))).))....................... (-20.85 = -21.35 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:28 2006