Locus 7702

Sequence ID X_DroMel_CAF1
Location 19,200,106 – 19,200,216
Length 110
Max. P 0.642199
window12632

overview

Window 2

Location 19,200,106 – 19,200,216
Length 110
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 85.51
Mean single sequence MFE -16.30
Consensus MFE -11.86
Energy contribution -12.67
Covariance contribution 0.81
Combinations/Pair 1.08
Mean z-score -1.61
Structure conservation index 0.73
SVM decision value 0.23
SVM RNA-class probability 0.642199
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19200106 110 - 22224390
---------ACUAUAACAAUGGAAUUUAAAAAAAAAAAUCCAUUCAUAAAAGCAGCAGAUUAAAUGCACUUACAAAUUGUACAAAUACAAUUUAAAUGUAACCACAU-UGGUUUCCGUCA
---------........((((((.(((.......))).)))))).......((((((.......)))......((((((((....))))))))...)))((((....-.))))....... ( -14.90)
>DroSec_CAF1 21633 117 - 1
CAUACAAACACUAUAAUAAUCGAAUUUUUUUAAACAAAUCCAUU--UAAAAGCAGCAGAUUAAAUGCACUUACAAAUUGUGCAAAUACAAUUUAAAUGUAACCACAU-UGGUUUCCGUUA
................(((((.....((((((((........))--)))))).....)))))..(((((.........)))))...........((((.((((....-.))))..)))). ( -15.40)
>DroEre_CAF1 19204 108 - 1
---------GUUAUAAUAAUGGCAUUUUUUU-AACAAAUCCGUU--UAAAAGCGACAGAAUUAAUGCACUUACAAAUUGUACAAAUACAAUUUAAAUGUAACCACAUUUGGUUUCCGUUA
---------(((.....(((((.((((....-...)))))))))--....)))(((.(((....((((.(((..(((((((....)))))))))).))))((((....))))))).))). ( -14.50)
>DroYak_CAF1 19126 106 - 1
---------AUUAUAAUAAUGGAAUU-UUUU-AACAAAUCCAUU--GAAAAGCGGCAGAUUAAAUGCACUUACAAAUUGUACAAAUACAAUUUAAAUGUAACCACAU-UGGUUUCCGUUA
---------.......(((((((.((-(...-...)))))))))--)...(((((.(((((((.((...((((((((((((....)))))))....)))))...)))-))))))))))). ( -20.40)
>consensus
_________ACUAUAAUAAUGGAAUUUUUUU_AACAAAUCCAUU__UAAAAGCAGCAGAUUAAAUGCACUUACAAAUUGUACAAAUACAAUUUAAAUGUAACCACAU_UGGUUUCCGUUA
................(((((((............................((((((.......)))......((((((((....))))))))...)))(((((....)))))))))))) (-11.86 = -12.67 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:25 2006