Locus 7701

Sequence ID X_DroMel_CAF1
Location 19,198,535 – 19,198,638
Length 103
Max. P 0.928561
window12631

overview

Window 1

Location 19,198,535 – 19,198,638
Length 103
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 80.88
Mean single sequence MFE -25.10
Consensus MFE -16.84
Energy contribution -17.65
Covariance contribution 0.81
Combinations/Pair 1.05
Mean z-score -2.19
Structure conservation index 0.67
SVM decision value 1.19
SVM RNA-class probability 0.928561
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19198535 103 - 22224390
CAUACAAAUUUCGCAUUAGCCCCGGCA-ACAAUUUCCCCA----------------ACUCCACAGCUACCCAGCUACCCAAGCUACCCAGCUCCGGAGGUAAUGGAGUUCCGCUUUCAUC
............((....((....)).-...........(----------------((((((..(((....)))(((((.((((....))))...).)))).)))))))..))....... ( -21.80)
>DroSec_CAF1 20013 118 - 1
CAUACAAAUUUCGCAUUAGCCCCGGCA-ACAAUUUUCCCAGCUACCCUGCUCCACAGCUCCACAGCUCCACAGCUAGCCA-UCUACCCAGCUCCGGAGGUAAUGGAGUUCCGCUUUCAUC
............((....((....)).-...........(((......)))....(((((((.(.((((..((((.(...-.....).))))..)))).)..)))))))..))....... ( -23.60)
>DroEre_CAF1 17551 118 - 1
CAUACAAAUUUCGCAUUAGCCCCGGCA-ACAAUUUCCCCAACUCUCCGGUUACCCAGCUAUCCAGCUACCCAGCUUCACA-GCUCCCCAGCUCCUGGGAUAAUGGAGUUCCGCUUUCAUC
............((....((....)).-...............(((((.((((((((......((((....((((....)-)))....)))).))))).))))))))....))....... ( -24.40)
>DroYak_CAF1 17415 111 - 1
CAUACAAAUUUCGCAUUAGCCCCGGCAAACCAUUUCCCCAGCUC--------CAAAGCUCCACAGCUACCCAGCUCCCCA-GUUCACGAGCUCCGGGGGUAAUGGAGUUCCGCUUUCAUC
............((....((....))...(((((((((((((((--------...((((....((((....))))....)-)))...)))))..))))).)))))......))....... ( -30.60)
>consensus
CAUACAAAUUUCGCAUUAGCCCCGGCA_ACAAUUUCCCCAGCUC________CACAGCUCCACAGCUACCCAGCUACCCA_GCUACCCAGCUCCGGAGGUAAUGGAGUUCCGCUUUCAUC
.........(((.(((((.((((((......................................((((....))))......(((....))).)))))).))))))))............. (-16.84 = -17.65 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:24 2006