Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 325,186 – 325,306 |
Length | 120 |
Max. P | 0.667353 |
Location | 325,186 – 325,306 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.42 |
Mean single sequence MFE | -38.90 |
Consensus MFE | -28.02 |
Energy contribution | -29.18 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.24 |
Mean z-score | -1.82 |
Structure conservation index | 0.72 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.667353 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 325186 120 - 22224390 UACAAGUUUACUAAGCUUCGCGAGAAGGGCGAUCGCAUGAUGAACAUCAUCUUGGGUAUGACCAGCAAGGUGGUCAAGGAUCGUAAGGAGAACUUCCAAGAGGAGUCACGUGCGAUUGUU ...............((((....))))((((((((((((.(((...((.(((((((..((((((......))))))....((....))......))))))).)).))))))))))))))) ( -44.30) >DroVir_CAF1 112100 120 - 1 UAUAAGUUUACCAAGCUGCGCGAGAAGGGUGAUCGCAUGAUGAACAUCAUAUUGGGCAUGACACGCAAGGUGGUCAAGGAUCGCAAGGAUAAUUUCCAAAACGAAACGCAUGCCAUUAUC ..............(((((((((......(((((((.(.(((..((......))..))).)..(....))))))))....))))..(((.....)))..........))).))....... ( -29.60) >DroSim_CAF1 2179 120 - 1 UACAAGUUUACUAAGCUUCGCGAGAAGGGCGAUCGUAUGAUGAACAUCAUCUUGGGUAUGACCAGCAAGGUGGUCAAGGAUCGUAAGGAGAACUUCCAAGAGGAGUCACGUGCGAUUGUU ...............((((....))))((((((((((((.(((...((.(((((((..((((((......))))))....((....))......))))))).)).))))))))))))))) ( -42.30) >DroYak_CAF1 2390 120 - 1 UACAAGUUUACGAAGCUCCGCGAGAAGGGCGAUCGCAUGAUGAACAUCAUCCUGGGCAUGACCAGCAAGGUGGUCAAGGAUCGCAAGGAGAACUUCCAGGAGGAGUCGCGCGCGAUUGUU .((((.....((..(((((((((.........)))).((((....))))(((((((..((((((......))))))....((....))......))))))))))))..)).....)))). ( -38.80) >DroMoj_CAF1 99165 120 - 1 UACAAGUUCACGAAGCUGCGCGAGAAGGGCGAUCGCAUGAUGAACAUCAUUCUGGGCAUGACGCGCAAGGUGGUCAAGGAUCGCAACGAGAACUACUCGCCCGAGUCGCGCGCCAUCAUC ...........((.(.(((((((...((((((((.(.((((......(((..((.((.....)).))..))))))).))))).....(((.....)))))))...))))))).).))... ( -39.50) >consensus UACAAGUUUACGAAGCUGCGCGAGAAGGGCGAUCGCAUGAUGAACAUCAUCUUGGGCAUGACCAGCAAGGUGGUCAAGGAUCGCAAGGAGAACUUCCAAGAGGAGUCGCGUGCGAUUGUU ...............((.(....).))((((((((((((.(((...((.((((((...((((((......))))))....((....)).......)))))).)).))))))))))))))) (-28.02 = -29.18 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:17 2006