Locus 7699

Sequence ID X_DroMel_CAF1
Location 19,196,586 – 19,196,679
Length 93
Max. P 0.581401
window12626

overview

Window 6

Location 19,196,586 – 19,196,679
Length 93
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 85.42
Mean single sequence MFE -24.10
Consensus MFE -20.12
Energy contribution -20.47
Covariance contribution 0.34
Combinations/Pair 1.19
Mean z-score -1.61
Structure conservation index 0.83
SVM decision value 0.10
SVM RNA-class probability 0.581401
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19196586 93 - 22224390
GCACUCACAGUUGUUGAGAGGACUUCUUUCGGUAAUGUAGCGAGUGCCAAGCCCUAAUUAGAACACUAAGUAUUUGGGGUUAUUU----UUUUUUUU
((((((.(.((((..(((((.....)))))..))))...).))))))..((((((((((((....))))....))))))))....----........ ( -27.40)
>DroSec_CAF1 18150 97 - 1
GCACUCACAGUUGUUGAGGGGACUUCUUUCGGUAAUGUAGCGAGUGCCAAGCCCUGAUUAGAACACUAAGUAUUUGGGUUUUUUUUUUUUUUUUUUU
((((((.(.((((..(((((.....)))))..))))...).)))))).((((((...((((....))))......))))))................ ( -24.70)
>DroEre_CAF1 15608 94 - 1
GCACUCACAGUUGUAGGAGGCACUUCUUUCGGUAAUGUUGCGAAUGGAAAGCCCUAAUUAGAACACUAGGUAUUUGGGCUCCCUAU---UUUUUUUU
(((...(((.(((..(((((.....)))))..)))))))))((((((..(((((...((((....))))......)))))..))))---))...... ( -20.20)
>consensus
GCACUCACAGUUGUUGAGGGGACUUCUUUCGGUAAUGUAGCGAGUGCCAAGCCCUAAUUAGAACACUAAGUAUUUGGGCUUAUUUU___UUUUUUUU
((((((.(.((((..(((((.....)))))..))))...).)))))).((((((...((((....))))......))))))................ (-20.12 = -20.47 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:20 2006