| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,196,359 – 19,196,459 |
| Length | 100 |
| Max. P | 0.985735 |
| Location | 19,196,359 – 19,196,459 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.81 |
| Mean single sequence MFE | -24.60 |
| Consensus MFE | -12.51 |
| Energy contribution | -12.33 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.51 |
| SVM decision value | 2.02 |
| SVM RNA-class probability | 0.985735 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19196359 100 + 22224390 AAUGUACAUACAUGUACA-------------UACAUAU-------GCAUUGGCAUUGACAUGCGAGUGUAAUCAUCAACAGGUGGAAUGAUUUAUUAUUCCAGCUAAUCUGUACUCGAAA .(((((((....))))))-------------)(((..(-------(((((.((((....)))).)))))).........((.((((((((....)))))))).))....)))........ ( -27.20) >DroSec_CAF1 17931 94 + 1 AAUGUACAUA------CA-------------UACAUAU-------GCAUUGACAUUGACAUGCGAGUGUAAUCAUCAACAGGUGGAAUGAUUUAUUAUUCCAGCUAAUCCGUACUCGAAA ...((((...------..-------------(((((.(-------((((..........))))).))))).........((.((((((((....)))))))).)).....))))...... ( -22.20) >DroEre_CAF1 15398 103 + 1 CAUAAAU--------UGAUCAAUAAGCAGUGUGCAUAU-------GCAU-GUCAACGCCAU-CGAGCGUAAUCACCAACAGGUGGAAUGAUUUAUUAUUCCAGCUUAAAUGCACUAAAAA .......--------...............((((((..-------....-....((((...-...))))..........((.((((((((....)))))))).))...))))))...... ( -21.90) >DroYak_CAF1 15178 118 + 1 UAUUUAUAUGUAUUUAUAUCAAUGAGCAGUGUGCAUAUGCCACAUGCAU-GUCAACGCCAU-CGUGUGUAAUUACCAACAGGUGGAAUGAUUUAUUAUUCCAGCUAAAAUGCACUCCAAG ((((.(((((....))))).))))....(.((((((....((((((.((-(.......)))-))))))...........((.((((((((....)))))))).))...)))))).).... ( -27.10) >consensus AAUGUACAUA_____ACA_____________UACAUAU_______GCAU_GUCAACGACAU_CGAGUGUAAUCACCAACAGGUGGAAUGAUUUAUUAUUCCAGCUAAAAUGCACUCGAAA ..............................((((.............................(.(((....))))...((.((((((((....)))))))).)).....))))...... (-12.51 = -12.33 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:19 2006