Locus 7696

Sequence ID X_DroMel_CAF1
Location 19,193,634 – 19,193,734
Length 100
Max. P 0.927591
window12621 window12622

overview

Window 1

Location 19,193,634 – 19,193,734
Length 100
Sequences 3
Columns 103
Reading direction forward
Mean pairwise identity 80.26
Mean single sequence MFE -26.87
Consensus MFE -16.01
Energy contribution -16.13
Covariance contribution 0.12
Combinations/Pair 1.15
Mean z-score -2.01
Structure conservation index 0.60
SVM decision value 0.15
SVM RNA-class probability 0.605750
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19193634 100 + 22224390
AAGAUAAUGUAUCUG-CAGAAUAGCAUUUGAAGUAA--GAUGGCAUCUGCAAAGCACAAGAGCGCUGUUUCUCCGUGCAGGAUGCGUCAUCUUGUAUGUAUGU
(((((.(((((((((-((((....(((((......)--))))...)))))...((((.((((......))))..)))).)))))))).))))).......... ( -29.20)
>DroSec_CAF1 15253 100 + 1
--GAUAAUGUAUCUG-CAGAAUAGCAUUUGAAGUGAGAGAUGGCAUCUGCAAAGCACAAGAGUGCUGAUUCUUCGUGCAGGAUGCGUCAUCUUGUAUGUAUGU
--(((.(((((((((-((((....(((((........)))))...)))))...((((((((((....)))))).)))).)))))))).)))............ ( -29.70)
>DroEre_CAF1 12510 87 + 1
---A-----UAUCUGCAGGAAUAGUAUUUGAAGUAA--GAUGGCAUCGGAAAAGCACAAAAAUGCUGUUU-UUUGUGCAGCAUGCGUCAUCUUGUAUG-----
---.-----....(((((((...((((((((.((..--....)).)))))...(((((((((......))-)))))))....)))....)))))))..----- ( -21.70)
>consensus
__GAUAAUGUAUCUG_CAGAAUAGCAUUUGAAGUAA__GAUGGCAUCUGCAAAGCACAAGAGUGCUGUUUCUUCGUGCAGGAUGCGUCAUCUUGUAUGUAUGU
..................(((((((((((...........((((.........)).)).)))))))))))...(((((((((((...)))))))))))..... (-16.01 = -16.13 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 2

Location 19,193,634 – 19,193,734
Length 100
Sequences 3
Columns 103
Reading direction reverse
Mean pairwise identity 80.26
Mean single sequence MFE -21.37
Consensus MFE -13.34
Energy contribution -13.57
Covariance contribution 0.23
Combinations/Pair 1.11
Mean z-score -2.44
Structure conservation index 0.62
SVM decision value 1.18
SVM RNA-class probability 0.927591
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19193634 100 - 22224390
ACAUACAUACAAGAUGACGCAUCCUGCACGGAGAAACAGCGCUCUUGUGCUUUGCAGAUGCCAUC--UUACUUCAAAUGCUAUUCUG-CAGAUACAUUAUCUU
..........((((((..(((((.((((.(......)(((((....))))).)))))))))))))--))........(((......)-))............. ( -24.20)
>DroSec_CAF1 15253 100 - 1
ACAUACAUACAAGAUGACGCAUCCUGCACGAAGAAUCAGCACUCUUGUGCUUUGCAGAUGCCAUCUCUCACUUCAAAUGCUAUUCUG-CAGAUACAUUAUC--
...........(((((..(((((.((((.((....))(((((....))))).))))))))))))))...........(((......)-))...........-- ( -23.20)
>DroEre_CAF1 12510 87 - 1
-----CAUACAAGAUGACGCAUGCUGCACAAA-AAACAGCAUUUUUGUGCUUUUCCGAUGCCAUC--UUACUUCAAAUACUAUUCCUGCAGAUA-----U---
-----.....((((((..((((...(((((((-((......))))))))).......))))))))--)).........................-----.--- ( -16.70)
>consensus
ACAUACAUACAAGAUGACGCAUCCUGCACGAAGAAACAGCACUCUUGUGCUUUGCAGAUGCCAUC__UUACUUCAAAUGCUAUUCUG_CAGAUACAUUAUC__
............((((..((((.(((((.........(((((....))))).)))))))))))))...................................... (-13.34 = -13.57 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:16 2006