Locus 7695

Sequence ID X_DroMel_CAF1
Location 19,182,491 – 19,182,609
Length 118
Max. P 0.671590
window12620

overview

Window 0

Location 19,182,491 – 19,182,609
Length 118
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 89.84
Mean single sequence MFE -37.44
Consensus MFE -28.14
Energy contribution -28.82
Covariance contribution 0.69
Combinations/Pair 1.11
Mean z-score -1.76
Structure conservation index 0.75
SVM decision value 0.29
SVM RNA-class probability 0.671590
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19182491 118 - 22224390
UUCAGUGCAUUCGUAACAUGCAUCAAAACAGCAAGGAUGUUG--AGUGGCAGUGUGCCACCGAAUUUGUUUACUUUUCACAACAUUCCGGCUAGGCGUGUGCGCUGCUAACAGCAGGAGC
......((.((((((.(((((........(((..((((((((--.(((((.....))))).(((...(....)..))).))))))))..)))..))))))))((((....)))).))))) ( -35.70)
>DroSec_CAF1 5333 116 - 1
UCCAGUGCAUCCUUAACGUGCAUCA--GCAGCAAGGCUGUUGGCAGUGGCAG--UGCCACCGAAUUUGUUUACUUUUCACAACAUUCCGGCAAGGCGUGUGCGCUGCUAACAGCAGGAGC
(((.((((((.......))))))..--........((((((((((((((((.--((((.((((((((((.........)))).))).)))...))))))).))))))))))))).))).. ( -42.40)
>DroEre_CAF1 5491 111 - 1
UCCAGUGCAUCCUUAACAUGCAUCA-----ACAAGGAUGUUG--UGUGGUAG--UGCCACCUAAUUUGUUUACUUUUCACAACAUUCCGGCAAGGCGUGCGCGCUGCUAACAGCAGGAGC
(((.((((((((((..(.((.....-----.)).((((((((--((.(((((--...............)))))...)))))))))).)..)))).))))))((((....)))).))).. ( -35.66)
>DroYak_CAF1 5417 111 - 1
UCCAGUGCAUCCUUAACAUGCAUCA-----ACAAGGAUGUUG--UGUGGCAG--UGCCAGCUAAUUUGUUUACUUUUCACAACAUUCCGGCAAGGCGUGCGCGCUGCUAACAGCAGGAGC
(((.((((((((((..(.((.....-----.)).((((((((--((((((..--.))))((......))........)))))))))).)..)))).))))))((((....)))).))).. ( -36.00)
>consensus
UCCAGUGCAUCCUUAACAUGCAUCA_____ACAAGGAUGUUG__AGUGGCAG__UGCCACCGAAUUUGUUUACUUUUCACAACAUUCCGGCAAGGCGUGCGCGCUGCUAACAGCAGGAGC
(((.((((((((((..(.(((.........))).((((((((...(((((.....))))).......(....)......)))))))).)..)))).))))))((((....)))).))).. (-28.14 = -28.82 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:15 2006