Locus 7694

Sequence ID X_DroMel_CAF1
Location 19,176,204 – 19,176,303
Length 99
Max. P 0.585075
window12619

overview

Window 9

Location 19,176,204 – 19,176,303
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 82.35
Mean single sequence MFE -29.92
Consensus MFE -20.61
Energy contribution -20.78
Covariance contribution 0.17
Combinations/Pair 1.36
Mean z-score -1.61
Structure conservation index 0.69
SVM decision value 0.10
SVM RNA-class probability 0.585075
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19176204 99 - 22224390
AUUUCCCAGUUGGACCUGCAGUUGCAGGACGAAGCUGGUGGCGACAUUUCUAGCUUUAUAACCAAUGGCGAAUGGGACUUGUUAGGUAGGUCAUGUGCU
..((((((.((((.(((((....)))))..((((((((((....))...))))))))....))))))).)))...((((((.....))))))....... ( -32.70)
>DroVir_CAF1 13324 98 - 1
-AUUUACAGCUGGACCUACAAUUACAGGAUGAAGCUGGCGGCGACAUCUCCAGUUUCAUAACAAAUGGCGAAUGGGACUUGUUAGGUGAGUUGAGAUAA
-((((.(((((.(.((((.....(((((((((((((((.((.....)).))))))))))..(..((.....))..).)))))))))).))))))))).. ( -26.10)
>DroGri_CAF1 12993 98 - 1
-AAUUACAGCUGGACCUGCAAUUACAGGACGAAGCUGGCGGCGACAUCUCAAGUUUCAUAACCAAUGGCGAAUGGGACUUGCUAGGUGAGUUGUUCUCA
-.....(((((...((((......))))....)))))(((((..((((((((((..(((..((...))...)))..)))))..))))).)))))..... ( -30.50)
>DroEre_CAF1 16423 99 - 1
AUUUCCCAGUUGGACCUGCAAUUGCAGGACGAAGCUGGUGGCGACAUUUCUAGCUUUAUAACCAAUGGCGAAUGGGACUUGUUAGGUAGGUAAAGAGCA
...((((((((((.(((((....)))))..((((((((((....))...))))))))....)))))......)))))...................... ( -29.40)
>DroYak_CAF1 17368 99 - 1
AUUUCCCAGUUGGACCUGCAAUUGCAGGACGAAGCUGGUGGCGACAUUUCUAGCUUCAUCACCAAUGGCGAAUGGGACUUGUUAGGUAGGUUAAGAGCA
..((((((.((((.(((((....)))))..((((((((((....))...))))))))....))))))).)))...((((((.....))))))....... ( -33.10)
>DroPer_CAF1 43594 99 - 1
GUUUGACAGUUGGAUCUGCAGUUGCAGGAUGAAGCUGGCGGAGACAUUUCUAGCUUCAUAACAAACGGAGAGUGGGAUCUGCUAGGUGAGUUGAGAAGA
(((((.........(((((....)))))((((((((((.(....)....))))))))))..)))))(.(((......))).)................. ( -27.70)
>consensus
AUUUCACAGUUGGACCUGCAAUUGCAGGACGAAGCUGGCGGCGACAUUUCUAGCUUCAUAACCAAUGGCGAAUGGGACUUGUUAGGUAAGUUAAGAGCA
........(((((.(((((....)))))..((((((((.(....)....))))))))....))))).........((((((.....))))))....... (-20.61 = -20.78 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:14 2006