Locus 7692

Sequence ID X_DroMel_CAF1
Location 19,174,853 – 19,174,959
Length 106
Max. P 0.535062
window12616

overview

Window 6

Location 19,174,853 – 19,174,959
Length 106
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 95.96
Mean single sequence MFE -25.25
Consensus MFE -24.20
Energy contribution -24.20
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.41
Structure conservation index 0.96
SVM decision value 0.00
SVM RNA-class probability 0.535062
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19174853 106 - 22224390
UAGAAAGGGGGUGAGGUUCAGUGCAGAAAAUACGGUAGUAGUUUUUUAUUGAAGGCAACGAAAGAAAGGUCAU---AAUGGAAAUGGCGACCAUCCAAUAAACCUGGCC
.........(((.((((((((((.(((((.(((....))).))))))))))).((...(....)...((((..---.((....))...))))..)).....)))).))) ( -25.60)
>DroSec_CAF1 17111 106 - 1
UAGGAAGGGGGUGAGGUUCAGUGCAGAAAAUACGGUAGUAGUUUUUUAUUGAAGGCAACGAAAGAAAGGUCAU---AAUGGAAAUGGCGACCAUCCAAUAAACCUGGCC
.........(((.((((((((((.(((((.(((....))).))))))))))).((...(....)...((((..---.((....))...))))..)).....)))).))) ( -25.60)
>DroEre_CAF1 14950 105 - 1
UCAG-AGGGGGUGAGGUUCAGUGCAGAAAAUACGGUAGUAGUUUUUUAUUGAAGGCAACGAAAGAAAGGUCAU---AAUGGAAAUGGCGACCAUCCAAUAAACCUGGCC
....-....(((.((((((((((.(((((.(((....))).))))))))))).((...(....)...((((..---.((....))...))))..)).....)))).))) ( -25.60)
>DroYak_CAF1 15874 108 - 1
UAAG-UGGGGGUGAGGUUCAGUGCAGAAAAUACGGUAGUAGUUUUUUAUUGAAGGCAACGAAAGAAAGGUCAUAAUAAUGGAAAUGGCGACCAUCCAAUAAACCUGGCC
....-....(((.((((((((((.(((((.(((....))).))))))))))).(((..(....)....))).......((((..(((...)))))))....)))).))) ( -24.20)
>consensus
UAAG_AGGGGGUGAGGUUCAGUGCAGAAAAUACGGUAGUAGUUUUUUAUUGAAGGCAACGAAAGAAAGGUCAU___AAUGGAAAUGGCGACCAUCCAAUAAACCUGGCC
.........(((.((((((((((.(((((.(((....))).))))))))))).(((..(....)....))).......((((..(((...)))))))....)))).))) (-24.20 = -24.20 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:11 2006