Locus 7691

Sequence ID X_DroMel_CAF1
Location 19,174,125 – 19,174,236
Length 111
Max. P 0.670890
window12615

overview

Window 5

Location 19,174,125 – 19,174,236
Length 111
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 94.06
Mean single sequence MFE -18.50
Consensus MFE -15.80
Energy contribution -15.80
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.68
Structure conservation index 0.85
SVM decision value 0.29
SVM RNA-class probability 0.670890
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19174125 111 - 22224390
AUUUAUGUUUUGCCUUUCUUAUCAAGAAAUUAUAUUUCUCUGUGAAUUGGGGCACACAUAAAGGGCUAAAAUUUAGCUUCCCAAAAAUAAAAGAAUCCAUAUAAUCAUCUU
.(((((((..((((((..((((..((((((...))))))..))))...)))))).)))))))((((((.....))))))................................ ( -20.70)
>DroSec_CAF1 16396 108 - 1
UUUUAUCUUUUGCCUUUCUUAUCAAGAAAUUAUAUUUCUCUGUGAAUUGGGGCACACAUAAAGGGCUAAACUUUAGCUUCCCAA-AAUAAAAGAACCCA--UAAUCAUCUU
.....(((((((((((..((((..((((((...))))))..))))...))))).........((((((.....)))))).....-...)))))).....--.......... ( -18.50)
>DroEre_CAF1 14226 108 - 1
UAUUAUUUUUUGCCUUUCUUAUGAAGAAAUUAUAUUUCUCUGUGAAUUGGGGCACACAUAAAGGGCUAAAAUUUAGCUUCCCAA-AAUAAAAUAAUCCA--UAAUCAUCUC
.((((((((.((((((..((((..((((((...))))))..))))...))))))........((((((.....)))))).....-...))))))))...--.......... ( -18.80)
>DroYak_CAF1 15152 108 - 1
UUUUAUCUUUUGCCUUUCUUAUCAAGAAAUUAUAUUUCUCUGUGAAUUGGGGCACACAUAAAGGGCUAAAAUUUAGCUUCCCAA-AAUAAAAUAAACCA--UAAUCAUCUC
((((((....((((((..((((..((((((...))))))..))))...))))))........((((((.....)))))).....-.)))))).......--.......... ( -16.00)
>consensus
UUUUAUCUUUUGCCUUUCUUAUCAAGAAAUUAUAUUUCUCUGUGAAUUGGGGCACACAUAAAGGGCUAAAAUUUAGCUUCCCAA_AAUAAAAGAAUCCA__UAAUCAUCUC
..........((((((..((((..((((((...))))))..))))...))))))........((((((.....))))))................................ (-15.80 = -15.80 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:10 2006