Locus 7690

Sequence ID X_DroMel_CAF1
Location 19,171,816 – 19,171,913
Length 97
Max. P 0.914809
window12614

overview

Window 4

Location 19,171,816 – 19,171,913
Length 97
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 75.00
Mean single sequence MFE -16.50
Consensus MFE -11.34
Energy contribution -11.90
Covariance contribution 0.56
Combinations/Pair 1.06
Mean z-score -1.80
Structure conservation index 0.69
SVM decision value 1.10
SVM RNA-class probability 0.914809
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19171816 97 + 22224390
UCAAGAACUAUAUAUAUGCAUGCUUUUCCAUACA---------------------AAACAGCUAUUGUGAAAUGGAAAACAGCAAUGCAACAACGAACAAAUCUAUCUAACAUAUGUA--
........(((((((.((((((((((((((((((---------------------(........))))...)))))))..))).))))).....((.....))........)))))))-- ( -17.00)
>DroSec_CAF1 14129 84 + 1
UCAAGACCUA----UAGGCAUGCUUUUCCAUACA---------------------AAACAGCUAUUGUGAAGUGGAAAACAGCAAUGCAACAACGAAUAAAUCUAUCGA-----------
..........----...(((((((((((((((((---------------------(........))))...)))))))..))).)))).....(((.........))).----------- ( -15.30)
>DroEre_CAF1 12022 113 + 1
UCAUGAC--A----UAUGCAUGCUUUUCCAUACAAAUUGUCGAGACAUUUAUAAAAAACAGCUAUUGUGAAAUGGAACACAGCAAUGCAACAACGAACAAAUCUAUCAA-CAUAUAUACC
.......--.----..((((((((.((((((......(((....)))(((((((..........)))))))))))))...))).)))))....................-.......... ( -15.80)
>DroYak_CAF1 13013 114 + 1
UCAAGACUUA----UAUGCAUGCUUUUCCAUACAAAUGGUCGAGACAUUUAUAA-AAACAGCUAUUGUAAAAUGGAAAACAGCAAUGCAACAACGAGCAAAUCUAUCAA-CAUAUAUACC
........((----((((..(((((((((((..(((((.......)))))....-.....((....))...)))))))..)))).(((........)))..........-)))))).... ( -17.90)
>consensus
UCAAGACCUA____UAUGCAUGCUUUUCCAUACA_____________________AAACAGCUAUUGUGAAAUGGAAAACAGCAAUGCAACAACGAACAAAUCUAUCAA_CAUAUAUA__
.................((((((((((((((((((.............................))))...)))))))..))).))))................................ (-11.34 = -11.90 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:09 2006