Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,119,096 – 2,119,188 |
Length | 92 |
Max. P | 0.536107 |
Location | 2,119,096 – 2,119,188 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 71.00 |
Mean single sequence MFE | -30.15 |
Consensus MFE | -14.60 |
Energy contribution | -15.13 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.14 |
Mean z-score | -1.56 |
Structure conservation index | 0.48 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.536107 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2119096 92 + 22224390 CGGGCCCAGGUGGAAACGCCGGAUACGGUGUACUGGGACCGACUGGCGGUGAGUU--GUAUAGGACUAGGCAGAGAGGCUCGGCAACCAAAUCA (((((((.((((....)))).....((((.(....).)))).(((.(....((((--......)))).).))).).))))))............ ( -30.80) >DroSec_CAF1 46 80 + 1 CGGUCCCAGGUGGAAACGCCGGAUACGGUAUACUGGGACCGACUGGCGGUGAGUU--GUAUAGGACUCGACA------------AACCAGAUCA (((((((((..(....)((((....))))...))))))))).((((..(((((((--......))))).)).------------..)))).... ( -37.70) >DroSim_CAF1 46 79 + 1 CGGUCCCAGGUGGAAACGCCGGAUACGGUGUACUGGGACCGACUGGCGGUGAGUU--GUA-AGGACUCGACA------------AACCAGAUCA (((((((((......((((((....)))))).))))))))).((((..(((((((--...-..))))).)).------------..)))).... ( -37.60) >DroEre_CAF1 46 92 + 1 CUGGCUCAGGUGGAAACGCCGGAUACGGUGUACUGGGACCGAUUGGCGGUGAGUA--GUAUGAGAUGCGGCACAGAAACUCGUCAACCAGCUCA ..((((..((((....))))((...((((.(....).)))).(((((((((.(((--........)))..))).......)))))))))))).. ( -26.81) >DroYak_CAF1 46 92 + 1 CGGGCUCAGGUGGAAACGCCGGAUACGGUGUACUGGGACCGUCUGGCGGUGAGUU--GCAUGAGAUGCGGCAGAGAAACUCGGCAACCAUUUCA ..((((((...(....)((((((..((((.(....).))))))))))..))))))--...(((((((..((.(((...))).))...))))))) ( -32.20) >DroMoj_CAF1 43 85 + 1 AAGGCGCAAGUGGUCACGCCCGAUACAAUUUACUGGGAUCGUUUAGCGGUAAGCUCAUUGUU---CUUAUUGUAGAUA-UAAUC---AAAGU-- ..((((..........)))).(((...(((((((((((.((...(((.....)))...)).)---))))..)))))).-..)))---.....-- ( -15.80) >consensus CGGGCCCAGGUGGAAACGCCGGAUACGGUGUACUGGGACCGACUGGCGGUGAGUU__GUAUAGGACUCGGCA_AGA_A_UCG_CAACCAGAUCA ....(((((..(....)((((....))))...)))))((((.....))))............................................ (-14.60 = -15.13 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:24 2006