Locus 7689

Sequence ID X_DroMel_CAF1
Location 19,171,503 – 19,171,595
Length 92
Max. P 0.599862
window12613

overview

Window 3

Location 19,171,503 – 19,171,595
Length 92
Sequences 3
Columns 107
Reading direction reverse
Mean pairwise identity 63.58
Mean single sequence MFE -13.40
Consensus MFE -9.36
Energy contribution -9.70
Covariance contribution 0.34
Combinations/Pair 1.13
Mean z-score -0.76
Structure conservation index 0.70
SVM decision value 0.13
SVM RNA-class probability 0.599862
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19171503 92 - 22224390
-----------CACUGAAAUAUUCGAUUAUCAUACUUAUGUAUGCAUACAUGUAUGCAUUGGGUUUCUACGGACUUGAAAUAUACCCUAUUAACUGACUCAAU----
-----------..........(((((........((.(((((((((....))))))))).))...((....)).)))))........................---- ( -13.80)
>DroSec_CAF1 13838 72 - 1
------------------CUAUUCGAUUAUUAUAA----AUAUGCAUACAUGUAUGCAUUGUGUUUCUACGGACUUGAAAUAUACCCUAUUAAC-------------
------------------.................----..(((((((....)))))))((((((((.........))))))))..........------------- ( -11.60)
>DroEre_CAF1 11688 99 - 1
AAUAUUCACUAGUCGAAAAUAUUUGAAUAUUA--------UGUGCAUACAUGUAUGCAUUUUGUUUCUGCGUACUUGAAAUGUAUCCUAUUAAUAGAAUCAAUCCCA
...((((.....(((((....))))).(((((--------.((((((.((.(((((((.........))))))).))..)))))).....)))))))))........ ( -14.80)
>consensus
_____________C__AAAUAUUCGAUUAUUAUA______UAUGCAUACAUGUAUGCAUUGUGUUUCUACGGACUUGAAAUAUACCCUAUUAAC_GA_UCAAU____
.........................................(((((((....)))))))((((((((.........))))))))....................... ( -9.36 =  -9.70 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:08 2006