Locus 7688

Sequence ID X_DroMel_CAF1
Location 19,170,562 – 19,170,658
Length 96
Max. P 0.602689
window12612

overview

Window 2

Location 19,170,562 – 19,170,658
Length 96
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 75.89
Mean single sequence MFE -22.08
Consensus MFE -15.44
Energy contribution -15.63
Covariance contribution 0.19
Combinations/Pair 1.10
Mean z-score -1.49
Structure conservation index 0.70
SVM decision value 0.14
SVM RNA-class probability 0.602689
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19170562 96 - 22224390
GCUUACUUGCUGCUUUCCCAACUAGUGACGAA-AAUUAGUAAAGAGAAACAAUCGAUGGUUCUCAAAAAUGA-----------AAAUAAAAGUGGCGAA------------UUUGAUAUU
......((((..((((....((((((......-.))))))...(((((.((.....)).)))))........-----------.....))))..)))).------------......... ( -19.10)
>DroSec_CAF1 12882 107 - 1
GCUUACUUGCUGCUUUCCCAACUAGUGACGAG-AGUUAGUAGCGAGAAACAAUCGAUGGUUCUCAAAGAGAA-----------UAACAAAAGUAGCGAAUACAUAACU-CAUUUGAUAUU
......((((((((((.(((.(((.((((...-.)))).)))(((.......))).)))(((((...)))))-----------.....))))))))))..........-........... ( -25.10)
>DroEre_CAF1 10768 119 - 1
GCUUACUUGCCGCUUUCCGAACUAGUGACGAAAAAUUAGUUACGAGAAACAAUCGAUGGUUCUCAAAAAUAGUUCUACUUGUUUAAUAAAAGUAGCGAAUAAACAAUU-UAUUUGAUAUU
((......))(((.....(((((((((((.........)))))(((((.((.....)).))))).....))))))(((((.........))))))))......(((..-...)))..... ( -23.10)
>DroYak_CAF1 11618 119 - 1
GCUUACCCGCUGCUUUUCGAUCUAGUGACGAAAAAUUAGUAACGAGAAACUAUCGAUGGUUCUCAAAAAUAGAUCUACUUCUUUUAUAAAAGUAGCAAAUACAUAAUAAUAAUUAAU-UU
........(((((((((.((((((((.((.........)).))(((((.(((....)))))))).....))))))............))))))))).....................-.. ( -21.02)
>consensus
GCUUACUUGCUGCUUUCCCAACUAGUGACGAA_AAUUAGUAACGAGAAACAAUCGAUGGUUCUCAAAAAUAA___________UAAUAAAAGUAGCGAAUACAUAAUU_UAUUUGAUAUU
........((((((((....((((((........))))))...(((((.(.......).)))))........................))))))))........................ (-15.44 = -15.63 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:07 2006