Locus 7687

Sequence ID X_DroMel_CAF1
Location 19,157,246 – 19,157,351
Length 105
Max. P 0.582357
window12611

overview

Window 1

Location 19,157,246 – 19,157,351
Length 105
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 73.55
Mean single sequence MFE -25.36
Consensus MFE -13.98
Energy contribution -14.26
Covariance contribution 0.28
Combinations/Pair 1.14
Mean z-score -1.63
Structure conservation index 0.55
SVM decision value 0.10
SVM RNA-class probability 0.582357
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19157246 105 - 22224390
-UUUUUACGAGCGACCAAACGAUCG----UUAAUUGUGGUUAACCCUAGAA-AACCUCUUAGGGGUUGCUACGAGUGAG--GACUCAAUACUUAAUCUAGCC------CAACCAAAUUU
-.....((((.((......)).)))----)......((((((((((((((.-....)))..))))))((((.((.((((--.........)))).)))))).------.)))))..... ( -23.50)
>DroSec_CAF1 13986 112 - 1
UUUUUUACGAGCGACCUAACGAUCG----UUAAUUGUGGUUAACCCUAGAA-AAUCUCUUAGGGGUUGCUACGAGUGAG--GAUUCAUUACCAAAUCUAACCCUAUACCAACCUAAUUU
.(((((((.(((((.(....).)))----))..(((((((...(((((((.-....)).)))))...))))))))))))--)).................................... ( -25.50)
>DroSim_CAF1 11975 113 - 1
-UUUUUACGAGCGACCUAACGAUCG----UUAAUUGUGGUUAACCCUAGAA-AACCUCUUAGGUGUUGCUACGAGUGAGGGGAUUCAUUACCUAAUCUAACCCUAUACCAACAAAAUUU
-........(((((.(....).)))----))..(((((((.(((((((((.-....)).)))).))))))))))(((((((((((........))))...)))).)))........... ( -24.40)
>DroEre_CAF1 16888 103 - 1
-GUUUUAAGAGCGGCCCAACGAUCGUGGGUUAAUUGUGGUUAACCCUAGAA-AACCAUUUAGGGGCUGCUAUGAGUGAG--GAUUCAGGAUG------AGU------CCAAUCAAAUUU
-........((((((((.((....))((((((((....)))))))).....-..........)))))))).(((....(--(((((.....)------)))------))..)))..... ( -34.10)
>DroYak_CAF1 14310 81 - 1
-AUUUUAUGAGCCGCCUAACGAUCG----UUAAUUGUGGUUAGCCCUAAAAAAACCUCAUAGGGGUUGCUAGGAGUGA---------------------------------CCAAAUUA
-.....((((..((.....)).)))----)(((((.((((((..((((....(((((.....)))))..))))..)))---------------------------------)))))))) ( -19.30)
>consensus
_UUUUUACGAGCGACCUAACGAUCG____UUAAUUGUGGUUAACCCUAGAA_AACCUCUUAGGGGUUGCUACGAGUGAG__GAUUCAUUACC_AAUCUAACC_____CCAACCAAAUUU
....((((.(((((((..(((((.........))))).......(((((.........))))))))))))....))))......................................... (-13.98 = -14.26 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:06 2006