| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,153,202 – 19,153,310 |
| Length | 108 |
| Max. P | 0.574815 |
| Location | 19,153,202 – 19,153,310 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 92.13 |
| Mean single sequence MFE | -26.72 |
| Consensus MFE | -23.23 |
| Energy contribution | -22.67 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.574815 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19153202 108 + 22224390 UGGGA------AUGGGAAUGUCAAUCUCCGGCGCAAUCCCCAUACCAUGUCCAUGUCGCUUUCCUAUGCAAAGCGUUUAAUGCACAUUUCAGACCAUUUCUAGGCACUUC--UCCC .((((------(((((..((((.......)))).....))))).((((((.(((..((((((.......))))))....))).))))...(((.....))).))......--)))) ( -22.20) >DroSec_CAF1 9871 114 + 1 CGGGAAUGGGAAUGGGAAUGUCAAUCUCCGGCGCAAUCCCCAUACCAUGUCCAUGUCGCUUUCCUAUGCAAAGCGUUUAAUGCACAUUUCAGACCAUUCCUAGGCACCUC--UCCC .((((..(((..((((((((((.......((........)).....((((.(((..((((((.......))))))....))).))))....)).))))))))..).))..--)))) ( -32.40) >DroSim_CAF1 7815 108 + 1 CGGGA------AUGGGAAUGUCAAUCUCCGGCGCAAUCCCCAUACCAUGUCCAUGUCGCUUUCCUAUGCAAAGCGUUUAAUGCACAUUUCAGACCAUUCCUAGGCACCUC--UCCC .(((.------.((((((((((.......((........)).....((((.(((..((((((.......))))))....))).))))....)).))))))))..).))..--.... ( -25.60) >DroEre_CAF1 12902 110 + 1 UAGGA------AUGGGAAUGUCAAUCUCCGGCGCAAUCUCCAUACCAUGUCCAUGUCGCUUUCCUAUGCAAAGCGUUUAAUGCACAUUUCAGGCCAUUCCUAGGCACUGCUCUUCA ..((.------((((((.((((.......))))...)).)))).))((((.(((..((((((.......))))))....))).))))..((((((.......))).)))....... ( -25.30) >DroYak_CAF1 10090 110 + 1 UGGGA------AUGGGAAUGUCAAUCUCCGGCGCAAUCCCCAUUCCAUGUCCAUGUCGCUUUCCUAUGCAAAGCGUUUAAUGCACAUUUCAGGCCAUUCCUAGGCACUUCACUUCU ..(((------(((((..((((.......)))).....))))))))((((.(((..((((((.......))))))....))).)))).....(((.......)))........... ( -28.10) >consensus UGGGA______AUGGGAAUGUCAAUCUCCGGCGCAAUCCCCAUACCAUGUCCAUGUCGCUUUCCUAUGCAAAGCGUUUAAUGCACAUUUCAGACCAUUCCUAGGCACUUC__UCCC .((((.......((((((((((.......((........)).....((((.(((..((((((.......))))))....))).))))....)).))))))))..........)))) (-23.23 = -22.67 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:06 2006