Locus 7684

Sequence ID X_DroMel_CAF1
Location 19,149,686 – 19,149,780
Length 94
Max. P 0.556866
window12607

overview

Window 7

Location 19,149,686 – 19,149,780
Length 94
Sequences 3
Columns 104
Reading direction forward
Mean pairwise identity 71.48
Mean single sequence MFE -37.83
Consensus MFE -17.16
Energy contribution -17.50
Covariance contribution 0.34
Combinations/Pair 1.12
Mean z-score -2.35
Structure conservation index 0.45
SVM decision value 0.05
SVM RNA-class probability 0.556866
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19149686 94 + 22224390
CAAGUUGGAGCGUUCGAGAGAUCGCCCAAUC------UCCAUCGAU----CGAUCCACCAUAUUCCGGUCUUUGGGGCUUCGGGUUACGGUGGGGCAUUUGCCG
...(((((.(((.((....)).)))))))).------.((((((.(----(((.((.(((............)))))..))))....))))))(((....))). ( -33.50)
>DroSim_CAF1 4283 95 + 1
CAUGUCGGAGAG--------AUCGGACGAUCCAGCGAUCCAUCGAUCCACCGACUCACCAUAUUCCGGUUUUUGGGUCUUCGGGAU-CGGUGGGGCAUGUGCCG
...((((..(.(--------(((....)))))..))))((((((((((...((((((((.......)))....)))))....))))-))))))(((....))). ( -36.30)
>DroYak_CAF1 6546 87 + 1
CAAGUUGGAGCGAUUGAGAGAUCGA----------------CCGAUCCACCGAUCCACCAUAUUCCGGUUUUUGGGGCUUGGGGAU-CGGUGGGGCAUGUGCCG
...(((((..(((((....))))).----------------)))))((((((((((.(((..(((((.....)))))..)))))))-))))))(((....))). ( -43.70)
>consensus
CAAGUUGGAGCG_U_GAGAGAUCGA_C_AUC______UCCAUCGAUCCACCGAUCCACCAUAUUCCGGUUUUUGGGGCUUCGGGAU_CGGUGGGGCAUGUGCCG
...(((((............((((..................))))...)))))(((((..(((((((...........)))))))..)))))(((....))). (-17.16 = -17.50 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:02 2006