Locus 7683

Sequence ID X_DroMel_CAF1
Location 19,147,091 – 19,147,194
Length 103
Max. P 0.622290
window12606

overview

Window 6

Location 19,147,091 – 19,147,194
Length 103
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 77.60
Mean single sequence MFE -31.87
Consensus MFE -23.21
Energy contribution -24.18
Covariance contribution 0.97
Combinations/Pair 1.18
Mean z-score -1.02
Structure conservation index 0.73
SVM decision value 0.18
SVM RNA-class probability 0.622290
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19147091 103 + 22224390
GGAAGGCCAGACUGGUGCCGGUCAGGGCCACCUGACGGAAUGUGAACCGCCGGAACAUGGCGCCAUUGACAAUGCCUAUGCACG-GAG----AAUUUAAUGUAUAUAU
...((((.....((((((((((((((....))))))((...(....)..))......))))))))........))))(((((..-((.----...))..))))).... ( -31.32)
>DroSec_CAF1 3770 88 + 1
GGAAGGCCAGAAUGGUGCCGGUCAGGGCCACCUGACGGAAUGUGAACCGCCGGAACAUGGCGCCAUUGACAAUGCCUAUGGAGAAGA--------------------G
...((((...((((((((((((((((....))))))((...(....)..))......))))))))))......))))..........--------------------. ( -32.60)
>DroSim_CAF1 1661 94 + 1
GGAAGGCCAGAAUGGUGCCGGUCAGGGCCACCUGACGGAAUGUGAACCGCCGGAACAUGGCGCCAUUGACAAUGCCUAUGGACAAGAG----AAUGA----------G
...((((...((((((((((((((((....))))))((...(....)..))......))))))))))......))))...........----.....----------. ( -32.60)
>DroYak_CAF1 3907 98 + 1
GGAAGGCCAAAGUGGUGCCGGUCAAGGCCACCUGACGGAAUGUGAACCGCCGGAACAUGGCGCCAUUCACAAUGCCUAUGGAGGAGGGGACAAACGA----------G
...((((...((((((((((((....)))..(((.(((........))).))).....)))))))))......))))........(....)......----------. ( -31.10)
>DroMoj_CAF1 1670 90 + 1
AAAAGCCAAGGGUAGUGCCCGCCAGCGCCACCUGGCGGAAGGUGAAGCGCCGAAACAUUGCUCCAUUGACAAUGCCUGG-AA--AUAU-----UUGA----------G
.....(((.((((((((.(((((((......)))))))..((((...))))....))))))))(((.....)))..)))-..--....-----....----------. ( -26.30)
>DroAna_CAF1 1776 92 + 1
GGAAGGCCAGGCUGGUGCCGGUCAGGGCCACCUGGCGGAAGGUGAAGCGCCGGAACAUGGCCCCAUUGACGAUGCCUGUCG--GAGGG----AAGGA----------G
....(((((..((((((((.((((((....)))))).)........)))))))....)))))((.((((((.....)))))--).)).----.....----------. ( -37.30)
>consensus
GGAAGGCCAGAAUGGUGCCGGUCAGGGCCACCUGACGGAAUGUGAACCGCCGGAACAUGGCGCCAUUGACAAUGCCUAUGGA_GAGAG____AAUGA__________G
...((((...((((((((((((((((....))))))((...........))......))))))))))......))))............................... (-23.21 = -24.18 +   0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:01 2006