| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,145,430 – 19,145,539 |
| Length | 109 |
| Max. P | 0.698312 |
| Location | 19,145,430 – 19,145,539 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.20 |
| Mean single sequence MFE | -34.98 |
| Consensus MFE | -25.88 |
| Energy contribution | -25.13 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.698312 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19145430 109 - 22224390 AGCCACCAUUCAUACCAUCAAUGCACUCACCCUUUUGGCUUUACUCCUUUGGUUAGCUGAGUCCGUGGUGCGCCGCAUUUUGGGUAUACCCUCCAAAGGAUUGGGCCAA----------- ..................................(((((((...((((((((............((((....)))).....(((....))).))))))))..)))))))----------- ( -30.00) >DroSec_CAF1 2102 120 - 1 AGCCACCAUCCAUACCAUCAAUGCACUCACCCUCUUGGCUUUACUCCUUUGGCUAACUGAGUCCGUGGUGCGCCGCAUUUUGGGCAAACCCUCGCAAGGAUUGGGCCAAUAGAAGCCGCA .((..(.((((...........((((.(((.(((((((((..........))))))..)))...)))))))(((........)))............)))).)(((........))))). ( -30.60) >DroSim_CAF1 1 112 - 1 AGCCACCAUCCAUACCAUCAAUGCACUCACCCUCUUGGCCUUACUCCUUUGGCUAACUGAGUCCGUGGUGCGCCGCAUUUUGGGCAAGCCCUCCCAAGGAUUGGGCCAAUAG-------- .(((.(.((((...........((((.(((.(((((((((..........))))))..)))...)))))))........(((((........))))))))).))))......-------- ( -33.10) >DroEre_CAF1 5776 120 - 1 UGCCACCAUCCAUACCAUCAAUGCACUCACUCUCUUGGCUCUACUCCUCUGGCUAACUGAGUCCGUGGUGCGCCGCAUUCUGGGCAAACCUUCCAAAGGAUUGGGCCAAUAGAAGUCACA .....................((.(((...(((.(((((((...((((.(((........(((((..((((...))))..))))).......))).))))..))))))).)))))))).. ( -32.16) >DroYak_CAF1 2234 120 - 1 AGUCACCAUCCAUACCAUCAAUGCACUCACUUUAUUGGCUUUACUCCUCUGGCUAACUGAGUCCGUGGUGCGCCGCAUUUUGGGUAAACCCUCCAAAGGAUUGGGUCAAUAGAAGUCGCA .....................((((((...(((((((((((...((((.(((............((((....)))).....(((....))).))).))))..)))))))))))))).))) ( -31.90) >DroAna_CAF1 1 117 - 1 CGCCACCAUCCACACCAUCAACGCCCUCACCGCACUGGCCCUGCUCCUCUGGCUGACCGAGUCCCUGGUGCGCUACCUCCUGGGACGGCCCGCCAAGGGACAGGGCCAGUG-AUGUUG-- ............((.((((...((.......))((((((((((.(((..((((.(.((..(((((.((.(......).)).))))))).).))))..))))))))))))))-))).))-- ( -52.10) >consensus AGCCACCAUCCAUACCAUCAAUGCACUCACCCUCUUGGCUUUACUCCUCUGGCUAACUGAGUCCGUGGUGCGCCGCAUUUUGGGCAAACCCUCCAAAGGAUUGGGCCAAUAGAAGUCG__ ..................................(((((((...((((.(((............((((....)))).....(((....))).))).))))..)))))))........... (-25.88 = -25.13 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:00 2006