Locus 7680

Sequence ID X_DroMel_CAF1
Location 19,142,600 – 19,142,715
Length 115
Max. P 0.609003
window12602

overview

Window 2

Location 19,142,600 – 19,142,715
Length 115
Sequences 3
Columns 116
Reading direction forward
Mean pairwise identity 83.28
Mean single sequence MFE -17.90
Consensus MFE -11.57
Energy contribution -10.91
Covariance contribution -0.66
Combinations/Pair 1.14
Mean z-score -2.04
Structure conservation index 0.65
SVM decision value 0.15
SVM RNA-class probability 0.609003
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19142600 115 + 22224390
GAUCUUGAACUACUGCUACUACAUAUGUUUUCUAGCCUUGGUUUCGAAAAAAAAAAAAACAUUUAGCUCUAGGCCAAAUUAAUAAAA-AUUUCCUAAGCUCAUCCCACUCGUUACU
....((((((((..((((..((....))....))))..))).))))).................((((.((((..(((((......)-))))))))))))................ ( -14.40)
>DroSec_CAF1 13444 101 + 1
GAUCUUGAACUACUGCU-----AUAUGUUUUCUAGCCUUGGCUUCGAAU------AAAACGUUUAGCUCUAGGUCAAAUCAAUAAAAAAAAUCUUAACUUCAUCCCACUCGU----
(((.((((.(((..(((-----(.(((((((..(((....)))......------))))))).))))..))).)))))))................................---- ( -19.90)
>DroSim_CAF1 12250 103 + 1
GAUCUUGAACUACUGCU-----AUAUGUUUUCUAGCCUUGGCUUCGAAU------AAAACGUUUAGCUCUAGGCCAAAUCAAUAAAA-AAAUCUUAACUUCAUCCCACUCCC-ACU
(((.(((..(((..(((-----(.(((((((..(((....)))......------))))))).))))..)))..)))))).......-........................-... ( -19.40)
>consensus
GAUCUUGAACUACUGCU_____AUAUGUUUUCUAGCCUUGGCUUCGAAU______AAAACGUUUAGCUCUAGGCCAAAUCAAUAAAA_AAAUCUUAACUUCAUCCCACUCGU_ACU
(((.(((..(((..(((.......(((((((..(((....)))............)))))))..)))..)))..)))))).................................... (-11.57 = -10.91 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:57 2006