| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,141,316 – 19,141,435 |
| Length | 119 |
| Max. P | 0.936919 |
| Location | 19,141,316 – 19,141,435 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.44 |
| Mean single sequence MFE | -34.57 |
| Consensus MFE | -24.39 |
| Energy contribution | -25.07 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.71 |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.936919 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19141316 119 - 22224390 CCGAAGCGCGCGCUUUUCGCGAGACACGUGCGCCAUACUGAAUAAUAUGUGGGGCGUAUGUAACGCAAGUAUCU-GAAAGAUACUUUCUCGAAAUGGAUGUGAACUUCAAAAGACGUUUU ..((((..((((((.....(((((.(((((((((.(((..........))).))))))))).....(((((((.-....))))))))))))....)).))))..))))............ ( -38.40) >DroSim_CAF1 11012 119 - 1 CCGAAGCGCGCGCUUUUCGCGAGACACGUGCGCCAUACUGAAUAAUAUGUGGGGCGCAUGUAACGCAAGUAUCU-GAAAGAUACUUUUUCGAAAUGUAUGUGAACUUGAAAACACGUUUU .(((..((((..(.(((((((....(((((((((.(((..........))).)))))))))..)))(((((((.-....)))))))....)))).)..))))...)))............ ( -36.60) >DroYak_CAF1 5964 99 - 1 CCGAAGCGCGCGCUUUUCGCGAGACACGUGCACCAUACUCA---AUAUGUGGAGCGUAUGUAUCUGAAGCAGCGCUCAAGAUACUUUUUCUAACUGAAUGCG------------------ ......(((((((((((((.((.(((..(((.(((((....---...))))).)))..))).))))))).)))))((((((.......)))...)))..)))------------------ ( -28.70) >consensus CCGAAGCGCGCGCUUUUCGCGAGACACGUGCGCCAUACUGAAUAAUAUGUGGGGCGUAUGUAACGCAAGUAUCU_GAAAGAUACUUUUUCGAAAUGAAUGUGAACUU_AAAA_ACGUUUU ......((((((.....)))((((.(((((((((.(((..........))).))))))))).....(((((((......))))))))))).........))).................. (-24.39 = -25.07 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:55 2006