| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,123,301 – 19,123,406 |
| Length | 105 |
| Max. P | 0.682700 |
| Location | 19,123,301 – 19,123,406 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 78.69 |
| Mean single sequence MFE | -29.20 |
| Consensus MFE | -17.69 |
| Energy contribution | -17.03 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.682700 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19123301 105 + 22224390 AGCCGUCACCAAGCUGAACUCGAAAUUGAAUCGAACGGAAUCGAAUCGAAGCCAGGCCGAUCCAAUCGCAUUGCAGCACAGUGGGCACUGCCUAUGGCGGAACUA ..(((((.....((((....(((..(((.((((..(((..(((...)))..)).)..)))).)))))).....))))...((((((...)))))))))))..... ( -31.70) >DroSim_CAF1 8432 85 + 1 AGCCGUCACCAAGCUGAACUCGAAAUUGAAUCGAACGGAAUCG--------------------AAUCGUACUGCAGCACAGUGGGCACUGCCUACGGCGGAACUA ..(((((.....((((....(((..((((.((.....)).)))--------------------).))).....))))...((((((...)))))))))))..... ( -27.70) >DroYak_CAF1 6908 95 + 1 AGCCGUCACAAAGCUGAACUCGAAAUUGAAUCGAACGGAAUCGA-----AGCCAAGCC-----AAUCGCACUGCAGUACAGUGCAAGCUGGCUAUGGCGAAACUG ..((((((......)))..((((.......)))).)))......-----.((((((((-----(.(.((((((.....)))))).)..))))).))))....... ( -28.20) >consensus AGCCGUCACCAAGCUGAACUCGAAAUUGAAUCGAACGGAAUCGA_____AGCCA_GCC_____AAUCGCACUGCAGCACAGUGGGCACUGCCUAUGGCGGAACUA .(((((......((((...((((.......)))).((....))..............................)))).((((....))))...)))))....... (-17.69 = -17.03 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:52 2006