Locus 7674

Sequence ID X_DroMel_CAF1
Location 19,121,689 – 19,121,793
Length 104
Max. P 0.795812
window12595

overview

Window 5

Location 19,121,689 – 19,121,793
Length 104
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 93.43
Mean single sequence MFE -30.35
Consensus MFE -24.89
Energy contribution -26.82
Covariance contribution 1.94
Combinations/Pair 1.03
Mean z-score -2.01
Structure conservation index 0.82
SVM decision value 0.60
SVM RNA-class probability 0.795812
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19121689 104 + 22224390
AGAUCCAAGUCCAUUUCACAAUUUGUGAAUAUGACACGCCUGGGAACCGGGAUACGAAAAGUUCCACUGUUUAUCUGAAAAGAUAUUGGAUUGGGACACUUGGG
....((((((.((((((((.....))))).))).....(((((...))))).........((((((.....(((((....)))))......)))))))))))). ( -30.80)
>DroSec_CAF1 4925 104 + 1
AGACCCAAGUCGAUUUCACAAUUUGUGAAUAUGACACGCCUGGGAACCGGGAUACGAAAAGUUCCACUGUUUAUCUGAAAAGAUAUUGGAUUGGGACACUUGGG
...(((((((((..(((((.....))))).........(((((...)))))...)))...((((((.....(((((....)))))......)))))).)))))) ( -33.50)
>DroSim_CAF1 5851 104 + 1
AUUCCCAAGUCGAUUUCACAAUUUGUGAAUAUGACACGCCUGGGAACCGGGAUACGAAAAAUUCCACUGUUUAUCUGAAAAGAUAUUGGAUUGGGACACUUGGG
..((((((((((..(((((.....)))))..))))...(((((...)))))...........((((.....(((((....))))).))))))))))........ ( -30.10)
>DroYak_CAF1 5319 101 + 1
A--CCGAAGUCCAUUUCACAAUGUGCGAAUAUGACACGCCUGGGACCCGGGAUACGAAAAGUUCCACUGUUUAUCUGGUAAGAUAUUGGAU-GGGACACUUGGG
.--((.((((...((((.....((((......).))).(((((...)))))....)))).(((((((((..(((((....))))).))).)-))))))))).)) ( -27.00)
>consensus
AGACCCAAGUCCAUUUCACAAUUUGUGAAUAUGACACGCCUGGGAACCGGGAUACGAAAAGUUCCACUGUUUAUCUGAAAAGAUAUUGGAUUGGGACACUUGGG
...((((((((...(((((.....)))))...)))...(((((...))))).........((((((.....(((((....)))))......))))))..))))) (-24.89 = -26.82 +   1.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:51 2006