Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,115,418 – 19,115,524 |
Length | 106 |
Max. P | 0.999579 |
Location | 19,115,418 – 19,115,524 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 91.31 |
Mean single sequence MFE | -27.36 |
Consensus MFE | -23.66 |
Energy contribution | -23.98 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.13 |
Mean z-score | -1.51 |
Structure conservation index | 0.86 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868706 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19115418 106 + 22224390 CUCAGUGUAGCAUUCCGCGCCGAGCCCAAAAGUUUGCUACAUUGAGUUAACUUGGUCUUUUUCCACGAUUUGUCGUGGAUUCGUUUGCAUUUAUUGCUUAUCGGUU ((((((((((((..(.((.....))......)..))))))))))))...............(((((((....))))))).(((...(((.....)))....))).. ( -31.70) >DroSec_CAF1 4040 106 + 1 CUCAGUGUAGCAUUCCGCGCCGAGCCCAAAAGUUUGCUACAUUGAGUUCACUUGGUCUUUUUCCACGGCUUGUCGUGGAUUCGUUUGCAUUUAUUGCUUAUCGGUU ((((((((((((..(.((.....))......)..))))))))))))...............(((((((....))))))).(((...(((.....)))....))).. ( -31.70) >DroSim_CAF1 2594 106 + 1 CUCAGUGUAGCAUUCCGCGCCGAGCCCAAAAGUUUGCUACAUUGAGUUCACUUGGUCUUUUUCCACGGCUUGUCGUGGAUUCGUUUGCAUUUAUUGCUUAUCGGUU ((((((((((((..(.((.....))......)..))))))))))))...............(((((((....))))))).(((...(((.....)))....))).. ( -31.70) >DroEre_CAF1 3286 105 + 1 UUCAGUGUAGCAUUUUGCACCGAGCCCAAAAGUUUGCUACAUAGUGUGUACUUGGUCGUUUUCCACGAUUCGU-GUAGAUUAGUUUGCAUUUAUUGCUUAUCGGUU .((.((((((....)))))).))(((...((((.(((....((((.(((((..((((((.....)))))).))-))).))))....)))......))))...))). ( -20.60) >DroYak_CAF1 3918 105 + 1 UUCAGUGUAGCAUUUCGCACCGAGCCCAAAAGUUUGCUACAUAGAAUUUACUUGGUCGUUUUCCACAAUUCGU-GUGGAUUAGUUUGCAUUUAUUGCUUAUCGGUU ....(((........)))((((((.((((((((((........))))))..)))).)....((((((.....)-))))).......(((.....)))...))))). ( -21.10) >consensus CUCAGUGUAGCAUUCCGCGCCGAGCCCAAAAGUUUGCUACAUUGAGUUCACUUGGUCUUUUUCCACGAUUUGUCGUGGAUUCGUUUGCAUUUAUUGCUUAUCGGUU ((((((((((((..(.((.....))......)..)))))))))))).....(((((.....(((((((....))))))).......(((.....)))..))))).. (-23.66 = -23.98 + 0.32)
Location | 19,115,418 – 19,115,524 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 91.31 |
Mean single sequence MFE | -26.18 |
Consensus MFE | -24.30 |
Energy contribution | -24.46 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.19 |
Mean z-score | -2.30 |
Structure conservation index | 0.93 |
SVM decision value | 3.74 |
SVM RNA-class probability | 0.999579 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19115418 106 - 22224390 AACCGAUAAGCAAUAAAUGCAAACGAAUCCACGACAAAUCGUGGAAAAAGACCAAGUUAACUCAAUGUAGCAAACUUUUGGGCUCGGCGCGGAAUGCUACACUGAG .........(((.....))).......(((((((....)))))))...............((((.(((((((...(((((.((...)).)))))))))))).)))) ( -29.90) >DroSec_CAF1 4040 106 - 1 AACCGAUAAGCAAUAAAUGCAAACGAAUCCACGACAAGCCGUGGAAAAAGACCAAGUGAACUCAAUGUAGCAAACUUUUGGGCUCGGCGCGGAAUGCUACACUGAG .........(((.....))).......((((((......))))))...............((((.(((((((...(((((.((...)).)))))))))))).)))) ( -29.10) >DroSim_CAF1 2594 106 - 1 AACCGAUAAGCAAUAAAUGCAAACGAAUCCACGACAAGCCGUGGAAAAAGACCAAGUGAACUCAAUGUAGCAAACUUUUGGGCUCGGCGCGGAAUGCUACACUGAG .........(((.....))).......((((((......))))))...............((((.(((((((...(((((.((...)).)))))))))))).)))) ( -29.10) >DroEre_CAF1 3286 105 - 1 AACCGAUAAGCAAUAAAUGCAAACUAAUCUAC-ACGAAUCGUGGAAAACGACCAAGUACACACUAUGUAGCAAACUUUUGGGCUCGGUGCAAAAUGCUACACUGAA ...((....(((.....))).......(((((-.......)))))...))............(..(((((((...(((((.((...)).))))))))))))..).. ( -19.10) >DroYak_CAF1 3918 105 - 1 AACCGAUAAGCAAUAAAUGCAAACUAAUCCAC-ACGAAUUGUGGAAAACGACCAAGUAAAUUCUAUGUAGCAAACUUUUGGGCUCGGUGCGAAAUGCUACACUGAA ...((....(((.....))).......(((((-(.....))))))...))..........(((..(((((((...(((((.((...)).))))))))))))..))) ( -23.70) >consensus AACCGAUAAGCAAUAAAUGCAAACGAAUCCACGACAAAUCGUGGAAAAAGACCAAGUAAACUCAAUGUAGCAAACUUUUGGGCUCGGCGCGGAAUGCUACACUGAG .........(((.....))).......((((((......))))))...............((((.(((((((...(((((.((...)).)))))))))))).)))) (-24.30 = -24.46 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:50 2006