Locus 7671

Sequence ID X_DroMel_CAF1
Location 19,105,257 – 19,105,377
Length 120
Max. P 0.671829
window12589 window12590

overview

Window 9

Location 19,105,257 – 19,105,377
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.22
Mean single sequence MFE -44.62
Consensus MFE -30.47
Energy contribution -29.75
Covariance contribution -0.72
Combinations/Pair 1.27
Mean z-score -1.67
Structure conservation index 0.68
SVM decision value 0.15
SVM RNA-class probability 0.609395
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19105257 120 + 22224390
UCGCCACCGCUCUCUACGACUACGAACCAAAGGCGGGCAGCAAUCAGCUGCAGCUGCGCACUGACUGCCAGGUGCUGGUCAUUGGCAAGGAUGGGGACAGCAAGGGCUGGUGGCGUGGCA
.((((((((((((....(((((.........(((..(((((.....))))).)))((((.(((.....))))))))))))...........((....))...))))).)))))))..... ( -48.70)
>DroPse_CAF1 2015 120 + 1
UAGCCACUGCCCUGUACGAUUACGAACCGAAGCCAGGGAGCAAUCAAUUGCAGCUGCGCACCGACUGCCAGAUAUUGGUUAUUGGCAAAGAUGGGGACAGCAAGGGCUGGUGGCGAGGAA
..(((((((((((((...........((((((((((...((((....))))..(((.(((.....))))))...)))))).))))......((....)))).))))).))))))...... ( -41.10)
>DroGri_CAF1 3824 120 + 1
UCGCCACCGCCCUAUACGACUUUGAUCCGAAGGCGGGCAGCAAUCAGCUGCAACUGCGUACCGAUUGCCAGGUACUUGUAAUUGGCAAGGAUGGCGACAGCAAAGGCUGGUGGCGUGGUA
.((((((((((...(((..(((((...)))))(((((((((.....)))))..)))))))..(.((((((....(((((.....)))))..)))))))......))).)))))))..... ( -47.80)
>DroWil_CAF1 3723 120 + 1
UUGCCACCGCCCUCUAUGACUAUGAACCAAAGGCGGGUAGUAACCAACUGCAAUUGCGGACCGAUUGUCAGGUUCUGGUGAUUGGCAAAGAUGGCGAUAGUAAGGGCUGGUGGCGUGGCA
..(((((((((((.....(((((...(((...(((.(((((.....)))))...))).(.(((((..((((...))))..)))))).....)))..))))).))))).))))))...... ( -45.30)
>DroAna_CAF1 4025 120 + 1
UUGCCACUGCCCUGUAUGAUUACGAACCAAAGGCUGGAAGCAAUCAACUGCAAUUGAGGACCGACUGCCAGGUCCUGGUCAUUGGCAAGGAUGGCGACAGCAAAGGCUGGUGGCGCGGCA
..(((((((((.((((....))))........((((...((.(((...(((...((((((((........)))))...)))...)))..))).))..))))...))).))))))...... ( -42.60)
>DroPer_CAF1 2024 120 + 1
UAGCCACUGCCCUGUACGAUUACGAACCGAAGCCAGGGAGCAAUCAAUUGCAGCUGCGCACUGAUUGCCAGAUAUUGGUUAUUGGCAAAGAUGGGGACAGCAAGGGCUGGUGGCNNNNNN
..(((((((((((((...........((((((((((.(.(((((((..(((......))).)))))))).....)))))).))))......((....)))).))))).))))))...... ( -42.20)
>consensus
UAGCCACCGCCCUGUACGACUACGAACCAAAGGCGGGCAGCAAUCAACUGCAACUGCGCACCGACUGCCAGGUACUGGUCAUUGGCAAAGAUGGCGACAGCAAGGGCUGGUGGCGUGGCA
..(((((((((((.............((.......))..(((......)))...(((...((((..(((((...)))))..))))......((....)))))))))).))))))...... (-30.47 = -29.75 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 19,105,257 – 19,105,377
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.22
Mean single sequence MFE -41.31
Consensus MFE -28.03
Energy contribution -27.87
Covariance contribution -0.16
Combinations/Pair 1.32
Mean z-score -1.87
Structure conservation index 0.68
SVM decision value 0.29
SVM RNA-class probability 0.671829
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19105257 120 - 22224390
UGCCACGCCACCAGCCCUUGCUGUCCCCAUCCUUGCCAAUGACCAGCACCUGGCAGUCAGUGCGCAGCUGCAGCUGAUUGCUGCCCGCCUUUGGUUCGUAGUCGUAGAGAGCGGUGGCGA
.....(((((((.((.(((((.............))..(((((..(.(((.(((.(.((((...((((....))))...)))).).)))...))).)...))))).))).))))))))). ( -43.22)
>DroPse_CAF1 2015 120 - 1
UUCCUCGCCACCAGCCCUUGCUGUCCCCAUCUUUGCCAAUAACCAAUAUCUGGCAGUCGGUGCGCAGCUGCAAUUGAUUGCUCCCUGGCUUCGGUUCGUAAUCGUACAGGGCAGUGGCUA
......(((((..(((((.(((((...((((.(((((((((.....))).))))))..)))).))))).......((((((.....(((....))).))))))....))))).))))).. ( -41.00)
>DroGri_CAF1 3824 120 - 1
UACCACGCCACCAGCCUUUGCUGUCGCCAUCCUUGCCAAUUACAAGUACCUGGCAAUCGGUACGCAGUUGCAGCUGAUUGCUGCCCGCCUUCGGAUCAAAGUCGUAUAGGGCGGUGGCGA
.....(((((((.(((((.(((((.(((....((((((..((....))..))))))..)))..))))).(((((.....)))))(((....))).............)))))))))))). ( -45.40)
>DroWil_CAF1 3723 120 - 1
UGCCACGCCACCAGCCCUUACUAUCGCCAUCUUUGCCAAUCACCAGAACCUGACAAUCGGUCCGCAAUUGCAGUUGGUUACUACCCGCCUUUGGUUCAUAGUCAUAGAGGGCGGUGGCAA
......((((((.(((((((((((.((((.....((((((.....(.(((........))).)((....)).)))))).............))))..)))))....)))))))))))).. ( -37.97)
>DroAna_CAF1 4025 120 - 1
UGCCGCGCCACCAGCCUUUGCUGUCGCCAUCCUUGCCAAUGACCAGGACCUGGCAGUCGGUCCUCAAUUGCAGUUGAUUGCUUCCAGCCUUUGGUUCGUAAUCAUACAGGGCAGUGGCAA
((((((.....((((....))))..(((.....(((.(((....((((((........))))))..))))))(((((((((..((((...))))...))))))).))..))).)))))). ( -41.30)
>DroPer_CAF1 2024 120 - 1
NNNNNNGCCACCAGCCCUUGCUGUCCCCAUCUUUGCCAAUAACCAAUAUCUGGCAAUCAGUGCGCAGCUGCAAUUGAUUGCUCCCUGGCUUCGGUUCGUAAUCGUACAGGGCAGUGGCUA
......(((((..(((((.(((((...(((..(((((((((.....))).))))))...))).))))).......((((((.....(((....))).))))))....))))).))))).. ( -39.00)
>consensus
UGCCACGCCACCAGCCCUUGCUGUCCCCAUCCUUGCCAAUAACCAGUACCUGGCAAUCGGUGCGCAGCUGCAGUUGAUUGCUCCCCGCCUUCGGUUCGUAAUCGUACAGGGCAGUGGCAA
......(((((..(((((.(((((.(((....((((((............))))))..)).).)))))......(((((((...(((....)))...)))))))...))))).))))).. (-28.03 = -27.87 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:47 2006