Locus 7670

Sequence ID X_DroMel_CAF1
Location 19,100,595 – 19,100,709
Length 114
Max. P 0.814430
window12588

overview

Window 8

Location 19,100,595 – 19,100,709
Length 114
Sequences 3
Columns 114
Reading direction reverse
Mean pairwise identity 83.63
Mean single sequence MFE -24.40
Consensus MFE -19.65
Energy contribution -18.99
Covariance contribution -0.66
Combinations/Pair 1.17
Mean z-score -1.98
Structure conservation index 0.81
SVM decision value 0.66
SVM RNA-class probability 0.814430
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19100595 114 - 22224390
UAGGGCGUGCACAGCGCCGCAUAGAUAGACACGUACGUUCGUUCAGUGAUAACGAAAGCAUAAUACGUUAAUCGAAAGAACGAAUGUAAACGCAUUAGAUAAACCAGAAAGCAA
...(((((.....)))))((.............(((((((((((..((((((((...........)))).))))...)))))))))))..(......)............)).. ( -28.10)
>DroSec_CAF1 1976 114 - 1
UAGGGCGCGAACAGCGCCGCAUAGAUAGACACGUACGAUCGUUCAGUGAUAACGAAAGCAUAAUACGUUGAUCGAAAGAACGAAUGUAAAAGCAUUAGAUAAACCAGAAAGCAA
...(((((.....)))))((.............((((.((((((..((((((((...........)))).))))...)))))).)))).........(......).....)).. ( -26.00)
>DroEre_CAF1 4422 104 - 1
AAAGGCGCGAACAGCGCUGCAUAGAUAGACACG--------UUAAGUGAUAGCGAAAACUGAAUACAUUAAUCAAAUGAAUGAAUGUAA--GCAUUAUACAAACCAGAAAGCAA
...(((((.....)))))((...........((--------(((.....))))).....((..((((((..((....))...)))))).--.))................)).. ( -19.10)
>consensus
UAGGGCGCGAACAGCGCCGCAUAGAUAGACACGUACG_UCGUUCAGUGAUAACGAAAGCAUAAUACGUUAAUCGAAAGAACGAAUGUAAA_GCAUUAGAUAAACCAGAAAGCAA
...(((((.....)))))((.........(((.............)))...............((((((..((....))...))))))......................)).. (-19.65 = -18.99 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:45 2006