Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,115,232 – 2,115,337 |
Length | 105 |
Max. P | 0.754439 |
Location | 2,115,232 – 2,115,337 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -33.33 |
Consensus MFE | -27.42 |
Energy contribution | -27.53 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.49 |
Structure conservation index | 0.82 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.754439 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2115232 105 - 22224390 UACGGCCAAGGGAGCUAUACUCGCGGCUGCACUAAUAGCAGCGGCUAAUAGGCACAUUAUUGAGUUGCCAAGUAAUCCUACUAGUGGAAACUCAAUCUAAUUGGU ....(((((.((((((......((.(((((.......))))).)).....)))......(((((((.(((((((....))))..))).))))))))))..))))) ( -33.00) >DroSec_CAF1 3354 103 - 1 UACGGCCAAGGGAGCUACACUCGCGGCUGCACUAAUAGCAGCGGCUAAUAAU--AAUUAGUGAGUUGCCAAGUAGUCCUACUAGUGGAAACUUAAUCUAAUUGGU ...((((..(.(((.....))).).(((((.......))))))))).....(--((((((((((((.(((((((....))))..))).))))))..))))))).. ( -32.40) >DroSim_CAF1 3366 103 - 1 UACGGCCAAGGGAGCUACACUCGCGGCUGCACUAAUAGCAGCGGCUAAUAGGCACAUUAGUGAGUUGCCAAGUAGUCCUACUAGUGGAAAC--AAUCUAAUUGGU ....(((((((((.((((....((.(((((.......))))).)).....(((((........).))))..)))))))).....((....)--)......))))) ( -34.60) >consensus UACGGCCAAGGGAGCUACACUCGCGGCUGCACUAAUAGCAGCGGCUAAUAGGCACAUUAGUGAGUUGCCAAGUAGUCCUACUAGUGGAAACU_AAUCUAAUUGGU ....(((((((.((((.(((..((.(((((.......))))).))((((......))))))))))).))......(((.......)))............))))) (-27.42 = -27.53 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:21 2006