Locus 7668

Sequence ID X_DroMel_CAF1
Location 19,097,304 – 19,097,412
Length 108
Max. P 0.997035
window12585

overview

Window 5

Location 19,097,304 – 19,097,412
Length 108
Sequences 3
Columns 115
Reading direction forward
Mean pairwise identity 67.16
Mean single sequence MFE -33.90
Consensus MFE -16.66
Energy contribution -18.23
Covariance contribution 1.57
Combinations/Pair 1.26
Mean z-score -2.58
Structure conservation index 0.49
SVM decision value 2.79
SVM RNA-class probability 0.997035
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19097304 108 + 22224390
GCAAACAAUUGGGUCUUCUGUUCAUACCAUUCAGAAUCGAAUGGCAUAGAUGCCAGUCCGAGCAACUGGUGGUUCAAAGGGAAAUUCAUUGUGGAAACA-------CAAUUGAAA
.....(((.(((((.((((.((...(((((.(((..(((..(((((....)))))...)))....))))))))...)).)))))))))(((((....))-------))))))... ( -31.60)
>DroSim_CAF1 196 93 + 1
GCAAACAAGUGGGUCUUCUGUUCAUGCCAUUCAGAAUCGGAUGGGAUAGAUGCCAGUCCGAGCAACUGGUGGUUCAAAGGGAAACUCAUUGUG----------------------
....((((.(((((.((((.((...(((((.(((..((((((.((.......)).))))))....))))))))...)).))))))))))))).---------------------- ( -30.10)
>DroEre_CAF1 1122 105 + 1
GCAUU---AUGUGUU------UCCCGUCGCUCGGGCU-GGAUGGGAUUGAUACCAGUCCGAGCAGCUGGUGGUUCAAAGGAAAACCCAUUGUGCAAACAUUCCAGGCAACUGAAA
((((.---(((.(((------(.((((.(((((((((-((((.......)).))))))))))).))(((....)))..)).)))).))).))))........(((....)))... ( -40.00)
>consensus
GCAAACAAAUGGGUCUUCUGUUCAUGCCAUUCAGAAUCGGAUGGGAUAGAUGCCAGUCCGAGCAACUGGUGGUUCAAAGGGAAACUCAUUGUG_AAACA_______CAA_UGAAA
.......(((((((.((((......(((((.(((..((((((((........))).)))))....)))))))).....)))).)))))))......................... (-16.66 = -18.23 +   1.57)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:42 2006