| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,096,451 – 19,096,546 |
| Length | 95 |
| Max. P | 0.601958 |
| Location | 19,096,451 – 19,096,546 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 78.61 |
| Mean single sequence MFE | -29.80 |
| Consensus MFE | -17.92 |
| Energy contribution | -18.03 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.601958 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19096451 95 + 22224390 GCUCUGCAACCUGGUCAUCCACCUGGACCCCAGCAGCUUGGAUCCGCGCGAGUUCAAUCGCAAGCCGCAAAUGGCACAGGUGAGUGA-AAUGCG---AG .(((.(((......(((..((((((..((...((.((((((((..((....))...))).))))).))....))..))))))..)))-..))))---)) ( -34.90) >DroGri_CAF1 11990 89 + 1 GCUCUGCAAUCUGAUCAUCCAUCUGGAUGCAAGCAGCAUGAAUGCACGCGAAUUCAAUCGCAAGCCCCAAAUGGCCCAGGUGAA---UAGA-------U ..((((..(((((.....((((.(((..((..(((.......)))..((((......))))..)).))).))))..)))))...---))))-------. ( -22.90) >DroEre_CAF1 340 93 + 1 GCUCUGCAACCUGGUCAUCCACCUGGACCCCAGCAGCAUGGAUCCGCGCGAUUUCAAUCGCAAGCCGCAAAUGGCACAGGUGAGCAA-AACA-----CC ((((....((((((((((((....))).....((.((..(....)..(((((....)))))..)).))...)))).)))))))))..-....-----.. ( -29.40) >DroWil_CAF1 189 98 + 1 GUUGUGCAAUCUAGUCAUUCAUCUGGAUGCCAGCAGCAUGGAUUCCCGUGAAUUCAAUCGCAAGCCACAAAUGGCCCAGGUGAAUCG-AAUCUCUCACU ((((.(((.(((((........))))))))))))......(((((((((((......))))..((((....))))...)).))))).-........... ( -28.80) >DroMoj_CAF1 39617 94 + 1 GCUCUGCAACCUGGUCAUACACCUCGACCCCACCAGCAUGGAUGCGCGCGAGUUCAAUCGCAAGCCGCAAAUGGCGCAGGUGAGGCAUAGCG-----CC (((.(((.....((((.........)))).((((.(((....)))((((((......))))..((((....)))))).))))..))).))).-----.. ( -33.50) >DroAna_CAF1 270 87 + 1 GCUCUGCAACCUGGUCAUCCAUCUGGAUCCCAGUAGCAUGGAUCCGCGCGAGUUCAAUCGCAAGCCUCAAAUGGCUCAGGUGAGGAC------------ ..(((...((((((((((......((((((.........))))))..((((......)))).........))))).)))))..))).------------ ( -29.30) >consensus GCUCUGCAACCUGGUCAUCCACCUGGACCCCAGCAGCAUGGAUCCGCGCGAGUUCAAUCGCAAGCCGCAAAUGGCACAGGUGAGGAA_AAC______CC ...................((((((....(((......)))......((((......))))..(((......))).))))))................. (-17.92 = -18.03 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:41 2006