Locus 7665

Sequence ID X_DroMel_CAF1
Location 19,093,334 – 19,093,433
Length 99
Max. P 0.646599
window12581

overview

Window 1

Location 19,093,334 – 19,093,433
Length 99
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 74.57
Mean single sequence MFE -32.47
Consensus MFE -18.62
Energy contribution -19.57
Covariance contribution 0.95
Combinations/Pair 1.05
Mean z-score -1.50
Structure conservation index 0.57
SVM decision value 0.24
SVM RNA-class probability 0.646599
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19093334 99 - 22224390
GGGCCCGAAAGGGCUCCCACCACAGCAAUAUACGCUUCACCACCGAGGAGCUGCUCUACUGGUAAGAUGCCCG------UUGGGGAAACCAUUGUUCUUAACAUG
((((((....))))))(((....((((......(((((........)))))))))....)))(((((....((------...((....))..)).)))))..... ( -30.70)
>DroPse_CAF1 3778 91 - 1
CUGCCCGCAAGGGAUCGCAUCACAGCAAUCUGCGCUUCAGCACAGAGGAGCUGCUCUUCUGGUAAUACAGUCGG-----UUUUCCCCA---------AGGAAAUA
...(((....)))((((.....((((..((((.((....)).))))...)))).....(((......))).)))-----)(((((...---------.))))).. ( -26.90)
>DroSim_CAF1 2810 96 - 1
GGGCCCGAAAGGGCUCCCACCACAGCAACAUACGCUUCACCACCGAGGAGCUGCUCUACUGGUAAGGUGCCCG------UUGUGGAAACCAUUGUUCCUAAC---
((((((....))))))...(((((((......(((((.((((..(((......)))...)))).)))))...)------)))))).................--- ( -34.50)
>DroEre_CAF1 8164 99 - 1
GGGCCCGAAAGGGCUCCCACCACAGCAACAUACGCUUCACCACCGAGGAGCUGCUCUACUGGUAAGUUGCCGG------GUGUGGCCACCAUCGUACAUGACAUG
((((((....)))).((((((.(.(((((....(((((........)))))((((.....)))).))))).))------))).))...))............... ( -35.00)
>DroYak_CAF1 3273 104 - 1
GGGCCCGAAAGUGCUCCCACCACAGCAACAUACGCUUCACCACCGAGGAGCUGCUCUACUGGUAAGUUGCCGG-CUGUGGUGUGGACACCAUCGUGCAUGACAUG
..((.(((..(((.((((((((((((.......(((((........)))))........((((.....)))))-)))))))).))))))..))).))........ ( -40.20)
>DroPer_CAF1 3711 91 - 1
CCGCCCGCAAGGGAUCGCAUCACAGCAAUCUGCGCUUCAGCACAGAGGAGCUGCUCUUCUGGUAAUACAGUCGG-----UUUUCCCCA---------AGGAAAUA
((((((....))).........((((..((((.((....)).))))...)))).....(((......))).)))-----.(((((...---------.))))).. ( -27.50)
>consensus
GGGCCCGAAAGGGCUCCCACCACAGCAACAUACGCUUCACCACCGAGGAGCUGCUCUACUGGUAAGAUGCCCG______UUGUGGACACCAU_GU_CAUGACAUG
((((((....))))))..((((.((((......(((((........)))))))))....)))).......................................... (-18.62 = -19.57 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:39 2006