Locus 7664

Sequence ID X_DroMel_CAF1
Location 19,091,324 – 19,091,438
Length 114
Max. P 0.573843
window12580

overview

Window 0

Location 19,091,324 – 19,091,438
Length 114
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 73.25
Mean single sequence MFE -34.15
Consensus MFE -19.82
Energy contribution -19.43
Covariance contribution -0.38
Combinations/Pair 1.59
Mean z-score -1.37
Structure conservation index 0.58
SVM decision value 0.08
SVM RNA-class probability 0.573843
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19091324 114 - 22224390
UUCUCGGCUGGAUUCUGUCUCCUCCAGCGACGAGUCCAACUCACAGGCUUCGACCUCGUCGAGGUCCAGUUUUCGACUGAAGCGUAAGUUCCUUCCGCAAGCCUUA---UAUGAUAA
.....((((((((((.(((.(.....).)))))))))........(((((((((...)))))))))(((((...)))))..(((.(((...))).))).))))...---........ ( -34.00)
>DroVir_CAF1 1675 117 - 1
ACAGCGUUUGGAUUCAGUUUCCUCCAGUGAUGAGUCGAAUUCGCAGGCAUCAAAUUCUCUGCGUUCCAGCUUUAGACUGAAACGUAAGUUUCUACCGCAGGUAUUUAACCUCGAUAA
...(((((((((.......)))..((((...((((.(((..((((((.(......).)))))))))..))))...))))))))))..........((.((((.....)))))).... ( -25.90)
>DroGri_CAF1 1708 117 - 1
ACAGCGUCUGGACUCGGUCUCCUCUAGUGAUGAGUCCAAUUCGCAGGCAUCGAGCUCGCUGCGCUCCAGCUUUCGAUUGAAGCGCAAGUUUCUGCCGCAGGUAUUCAAUAUCGAUAA
...(((..((((((((.((.(.....).))))))))))...))).(((((((((...((((.....)))).)))))..(((((....)))))))))...(((((...)))))..... ( -39.00)
>DroWil_CAF1 1600 114 - 1
AACACGACUGGAUUCCGUUUCUUCAAGCGAUGAAUCUAAUUCCCAGACAUCUGGUUCAUUGCGUUCCAGCUUUCGGCUGAAGCGUAAGCUGUUGCCCCAAGUCUUU---UUUGAUAA
.....((((((...............((((((((........((((....))))))))))))((..((((((...((....))..))))))..)).)).))))...---........ ( -31.30)
>DroMoj_CAF1 1680 117 - 1
ACAGCGACUGGACUCGGUGUCGUCCAGCGACGAGUCCAAUUCGCAGGCAUCGAGCUCCCUGCGCUCGAGCUUUAGACUGAAGCGUAAGUUUCUGCCGCAGGUGUUCAACCUCGACAA
...((((.(((((((...((((.....)))))))))))..)))).((((((((((.......))))))..........(((((....)))))))))(.((((.....)))))..... ( -46.60)
>DroAna_CAF1 3040 114 - 1
GUCCCGCCUGGACUCGGUCUCCUCCAGCGACGAGUCCAACUCCCAGGCGUCGAGUUCCUCCCGCUCCAGUUUCCGACUAAAGCGAAAGUUCCUGCCCCCCACCUUC---UUUGACCA
.....((((((....((.(((.((....)).))).)).....))))))((((((.......((((..((((...))))..))))...((....))...........---)))))).. ( -28.10)
>consensus
ACAGCGACUGGACUCGGUCUCCUCCAGCGACGAGUCCAAUUCGCAGGCAUCGAGCUCCCUGCGCUCCAGCUUUCGACUGAAGCGUAAGUUUCUGCCGCAGGUCUUC___UUCGAUAA
........(((((((.(((.(.....).)))))))))).......((((..(((((...((((((.(((.......))).))))))))))).))))..................... (-19.82 = -19.43 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:38 2006