Locus 7662

Sequence ID X_DroMel_CAF1
Location 19,087,653 – 19,087,754
Length 101
Max. P 0.572721
window12577

overview

Window 7

Location 19,087,653 – 19,087,754
Length 101
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 75.72
Mean single sequence MFE -23.99
Consensus MFE -11.91
Energy contribution -12.38
Covariance contribution 0.47
Combinations/Pair 1.15
Mean z-score -1.76
Structure conservation index 0.50
SVM decision value 0.08
SVM RNA-class probability 0.572721
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19087653 101 - 22224390
CCCGCACGCCUUUCAGGUGAGACUCAU--UUGAAAU--CCAAAUGAUGGUUCGUACUUACCACG-UUUUUA----U---CUCUAGGAUAUUUGCCUUUAUUCGGAGGCCUGCA
...(((.((((((((((((.....)))--))))))(--(((((((.((((........))))))-)))...----.---.....(((((........))))))))))).))). ( -29.50)
>DroPse_CAF1 4261 110 - 1
UCCGCAUGCCUUUCAGGUAAGACUUUGGAUAAACACCUACAACUUGUGAAAC--ACCUAAAACU-UUUCUUUUGAUAUAUUUCAGGACAUUUGCCUGUAUUCAGAGUCCUGCA
...(((((((.....)))).(((((((((((..(((.........)))....--..........-.................((((.(....)))))))))))))))).))). ( -23.70)
>DroSec_CAF1 4010 101 - 1
CCCGCACGCCUUCCAGGUGAGACUCAU--UUGAAAU--CCAAAUGAUGGUCCGUACUUAACACU-UUUUUA----U---CUCUAGGAUAUUUGCCUUUAUUCGGAGUCCUGCA
...(((((((.....)))).(((((((--(((....--.)))))))...((((....(((....-....((----(---(.....)))).......)))..))))))).))). ( -21.26)
>DroSim_CAF1 3740 101 - 1
CCCGCACGCCUUUCAGGUAAGACUCAU--UUGAAAU--CCAAAUGGUGGUCCGUACUUACCACG-UUUCUA----U---CUCUAGGAUAUUUGCCUUUAUUCGGAGUCCUGCA
...(((.(((.....)))..(((((..--...(((.--.(((((((((((........))))).-.(((((----.---...)))))))))))..))).....))))).))). ( -23.80)
>DroYak_CAF1 4200 103 - 1
UCCGCACGCCUUCCAGGUGAGAUCCAU--UAAAAACCCCCAAAUAAUGGUCCGUACUUACCAAG-UUUUUA----A---CUCUAGGAUAUUUGCCUUUAUUCGGAGUCCUGCA
...(((.(..((((.((((((..((((--((............))))))......))))))...-......----.---.....(((((........)))))))))..)))). ( -21.00)
>DroPer_CAF1 4249 111 - 1
UCCGCAUGCCUUUCAGGUAAGACUUUGGAUAAACACCUACAACUUGUGAAAC--ACAUAAAACUCUUUCUUUUGAUAUAUUUCAGGACAUUUGCCUGUAUUCAGAGUCCUGCA
...(((((((.....)))).(((((((((((............(((((....--.)))))......................((((.(....)))))))))))))))).))). ( -24.70)
>consensus
CCCGCACGCCUUUCAGGUAAGACUCAU__UAAAAAC__CCAAAUGAUGGUCCGUACUUAACACG_UUUCUA____U___CUCUAGGAUAUUUGCCUUUAUUCGGAGUCCUGCA
...(((((((.....)))).(((((.............(((.....)))...................................(((((........))))).))))).))). (-11.91 = -12.38 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:35 2006