Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,083,203 – 19,083,298 |
Length | 95 |
Max. P | 0.723394 |
Location | 19,083,203 – 19,083,298 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 78.40 |
Mean single sequence MFE | -33.22 |
Consensus MFE | -21.47 |
Energy contribution | -21.38 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.05 |
Mean z-score | -1.49 |
Structure conservation index | 0.65 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.723394 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19083203 95 - 22224390 C----ACUUAGACAUUGUCCAG----UGAUUCGUGGACAUAUUCACCUGCUGCAGACUGCGACUGAUGCUGGCCAGGAGGCAGGCAUUGAAGCUGUAGGAGAA .----.....((...((((((.----.......))))))...))..((.((((((.((.....(((((((.(((....))).))))))).)))))))).)).. ( -31.20) >DroSec_CAF1 5731 94 - 1 -----GACUGGACAUUGUCCAG----CGAUUCGUGGUCAUAAUCACCUGCUGCAGGCUGCGACUGAUGCUGGCCAGGAGGCAGGCGUUGAAGCUGUAGGAGAA -----(.((((((...))))))----).....(((((....)))))((.((((((.((.((((....(((.(((....))).))))))).)))))))).)).. ( -33.80) >DroSim_CAF1 5698 94 - 1 -----GGCUGGACAAUGUCCAG----CGAUUCGUGGUCAUAUUCACCUGCUGCAGGCUGCGACUGAUGCUGGCCAGGAGGCAGGCGUUGAAGCUGUAGGAGAA -----.(((((((...))))))----).....((((......))))((.((((((.((.((((....(((.(((....))).))))))).)))))))).)).. ( -37.30) >DroEre_CAF1 8860 96 - 1 AUUGUGGC---ACAUUUUCCAC----CGACUCGUGGACAUAUUCACCUGCUGCAGGCUGCGACUGAUGCUGGCCAGGAGGCAGGCGUUGAAGCUGUAGGAGAA ...((((.---......(((((----......))))).....))))((.((((((.((.((((....(((.(((....))).))))))).)))))))).)).. ( -30.20) >DroYak_CAF1 5261 100 - 1 AUUGGGGC---ACAUGAACCUGCAUGUGAUGCGUGUGCAUAUUCACCUGCUGCAGGCUGCGACUGAUGCUGGCCAGGAGGCAGGCAUUGAAGCUGUAGGAGAA .(((.(((---(..((((..((((..((...))..))))..))))..)))).))).(((((.((((((((.(((....))).))))))..)).)))))..... ( -35.50) >DroMoj_CAF1 11298 76 - 1 ----AAUC-----------------------UGCAGCGAGACUCACCUGCUGCAGGGUGCGACUGAUGCUGGCCAGGAGGCAGGCAUUGAAGCUGUACGAGAA ----..((-----------------------((((((.((......))))))))))(((((.((((((((.(((....))).))))))..)).)))))..... ( -31.30) >consensus _____GGC___ACAUUGUCCAG____CGAUUCGUGGACAUAUUCACCUGCUGCAGGCUGCGACUGAUGCUGGCCAGGAGGCAGGCAUUGAAGCUGUAGGAGAA ..........................................((.(((((.((((.......))((((((.(((....))).))))))...)).))))).)). (-21.47 = -21.38 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:34 2006