| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,082,883 – 19,082,990 |
| Length | 107 |
| Max. P | 0.748293 |
| Location | 19,082,883 – 19,082,990 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 82.97 |
| Mean single sequence MFE | -34.39 |
| Consensus MFE | -23.65 |
| Energy contribution | -25.25 |
| Covariance contribution | 1.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.748293 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19082883 107 + 22224390 --ACCACCAGCAACUACCAGCAGCUCCAGCGUUGCGAACAGCCCCAUUCCUUCAGUUGACUUCGCGUUGGCGGUAGCCGCCAGCCGCUGCUGCGAUUGCAAAUCACAAU------- --.......((((....(((((((.........(((((((((............))))..)))))((((((((...)))))))).)))))))...))))..........------- ( -37.00) >DroSec_CAF1 5411 107 + 1 --ACCACCAGCAGCUACCAGCAGCUCCAGCGUUGCGAACAGACCCAUUCCUUCAGUUGACUUCGCGUUGGCGGUAGCCGGCAGCCGCUGCUGCGAUUGCAAAUCAGAAU------- --.......(((((((((.(((((......)))))...................((..((.....))..))))))))..(((((....)))))...)))..........------- ( -33.70) >DroSim_CAF1 5378 107 + 1 --ACCACCAGCAGCUACCAGCAGCUCCAGCGCUGCGAACAGCCCCAUUCCUUCAGUUGACUUCGCGUUGGCGGUAGCCGCCAGCCGCUGCUGCGAUUGCAAAUCAGAAU------- --....((((((((....(((.((....)))))(((((((((............))))..)))))((((((((...)))))))).))))))).)...............------- ( -36.90) >DroEre_CAF1 8546 96 + 1 CCAGCACCAGCA----GCAGCAGCAUCAUC-----GAACAGCCCCAUUCCUUCAC-----UUCGCGUUGGCGGUAGCCGGCAGCCGCUGCUGCGAUUGCAAAUCAGAAU------C ...(((...(((----(((((.((.....(-----(((.................-----)))).((((((....)))))).)).))))))))...)))..........------. ( -33.73) >DroYak_CAF1 4933 103 + 1 --ACCACCGACA----CCAGCAGCCCCAUC--CAAAAACAGUCCCAUUCCUUCAG-----UUCGCGUUGGCGGUAGCCGCCAGCCGCUGCUGCGAUUGCAAAUCAGAAUCGGUAUC --...(((((..----.(((((((......--......................(-----....)((((((((...)))))))).))))))).(((.....)))....)))))... ( -30.60) >consensus __ACCACCAGCA_CUACCAGCAGCUCCAGCG_UGCGAACAGCCCCAUUCCUUCAGUUGACUUCGCGUUGGCGGUAGCCGCCAGCCGCUGCUGCGAUUGCAAAUCAGAAU_______ .........(((.....(((((((.........(((((......................)))))((((((((...)))))))).)))))))....)))................. (-23.65 = -25.25 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:33 2006