Locus 7657

Sequence ID X_DroMel_CAF1
Location 19,072,716 – 19,072,808
Length 92
Max. P 0.516742
window12569

overview

Window 9

Location 19,072,716 – 19,072,808
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 87.96
Mean single sequence MFE -25.46
Consensus MFE -19.24
Energy contribution -18.84
Covariance contribution -0.40
Combinations/Pair 1.09
Mean z-score -1.50
Structure conservation index 0.76
SVM decision value -0.03
SVM RNA-class probability 0.516742
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19072716 92 - 22224390
GGAAAUCUGUCACAUGACGCCGCUGAUAAGGAAAGCUGCUGCUGGUGGAGAGGUAGAGGGUGAGAAGGCAUUGGAAAACCGGAGAUUUCGAA
.((((((((((....)))((((((.........)))..(((((........)))))..........))).((((....)))))))))))... ( -23.10)
>DroSec_CAF1 24363 92 - 1
GGAAAUCUGUCACAUGACGCCGCUGAUAAGGAAAGCUGCCGCUGGCGGAGAGGAAGAGGGUGAGGAGGCGCUGGAAAACCGGAGAUUUCGAG
.((((((((((....)))(((.((.((........(((((...)))))...........)).))..))).((((....)))))))))))... ( -26.31)
>DroSim_CAF1 26298 92 - 1
GGAAAUCUGUCACAUGACGCCGCUGAUAAGGAAAGCUGCCGCUGGCGGAGAGGAAGAGGGUGAGAAGGCGCUGGAAAACCGGAGAUUUCGAG
.((((((((((....)))(((.((.((........(((((...)))))...........)).))..))).((((....)))))))))))... ( -25.41)
>DroEre_CAF1 24588 83 - 1
GGAAAUCUGUCACAUGACGCCGCUGAUAAGGAAAGCUGC---UGGUGGAGAGG------GAGAGAAGUCGCUGGAAAGCCGGAGAUUUCAAA
.....(((.((.(((.(.((.(((.........))).))---).)))..)).)------))..((((((.((((....)))).))))))... ( -25.00)
>DroYak_CAF1 26886 86 - 1
GGAAAUCUGUCACAUGACGCCGCUGAUAAGGAAAGCUGCCGGUGGUGGAUAGG------GAGAGAAGUCGCUGGAAGGCCGGAGAUUUCGAA
.....((((((.(((.((((.(((.........))).))..)).)))))))))------....((((((.((((....)))).))))))... ( -27.50)
>consensus
GGAAAUCUGUCACAUGACGCCGCUGAUAAGGAAAGCUGCCGCUGGUGGAGAGG_AGAGGGUGAGAAGGCGCUGGAAAACCGGAGAUUUCGAA
.((((((((((....))).((((((....((....)).....))))))......................((((....)))))))))))... (-19.24 = -18.84 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:28 2006