Locus 7655

Sequence ID X_DroMel_CAF1
Location 19,066,926 – 19,067,019
Length 93
Max. P 0.998174
window12567

overview

Window 7

Location 19,066,926 – 19,067,019
Length 93
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 93.21
Mean single sequence MFE -39.96
Consensus MFE -38.28
Energy contribution -38.36
Covariance contribution 0.08
Combinations/Pair 1.13
Mean z-score -1.85
Structure conservation index 0.96
SVM decision value 3.03
SVM RNA-class probability 0.998174
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19066926 93 + 22224390
UGCCCCUGGCGGUGCCACUGCCUCCGCUGUACAAUGCCCAGCCAUUCCGGCCUGUUGUACA---ACCGCUGGUCAAGGAGAACGUAGUGGCCCAGU
.(((...)))((.((((((((((((((((.........))))....(((((..(((....)---)).)))))....))))...))))))))))... ( -36.70)
>DroSec_CAF1 18532 93 + 1
UGCCCCUGGCGGUGCCACUGCCUCCGCUGUACAAUGCCCAGCCAUUCCGGCCUGUGGUGCC---ACCGCUGGUCAAGGAGAACGUAGUGGCCCAGU
.(((...)))((.((((((((((((((((.........))))......((((.((((....---.)))).))))..))))...))))))))))... ( -41.70)
>DroSim_CAF1 20467 93 + 1
UGCCCCUGGCGGUGCCACUGCCUCCGCUGUACAAUGCCCAGCCAUUCCGACCUGUGGUGCC---ACCGCCGGUCAAGGAGAACGUAGUGGCCCAGU
.(((...)))((.((((((((((((((((.........))))......((((.((((....---.)))).))))..))))...))))))))))... ( -42.30)
>DroEre_CAF1 18806 93 + 1
UGCCCCUGGCGGUGCCACUGCCUCCGCUGUACAAUGCCCAGCCAUUCCGGCCUGUGGUGCA---CCCGCUGGUCAAGGAGAACAUAGUGGCUCAGU
.(((...))).(.(((((((.((((((((.........))))......((((.((((....---.)))).))))..))))....))))))).)... ( -34.70)
>DroYak_CAF1 19680 96 + 1
UGCCCCUGGCGGUGCCACUGCCGCCGCUGUACAAUGCCCAGCCAUUCCGGCCAGUGGUGCCAGCAUCGCUGGUCAAGGAGAACGCAGUGGCUCAGU
.(((...))).(.((((((((....((((.........))))..(((((((((((((((....)))))))))))..))))...)))))))).)... ( -44.40)
>consensus
UGCCCCUGGCGGUGCCACUGCCUCCGCUGUACAAUGCCCAGCCAUUCCGGCCUGUGGUGCC___ACCGCUGGUCAAGGAGAACGUAGUGGCCCAGU
.(((...)))((.((((((((((((((((.........))))......((((.(((((......))))).))))..))))...))))))))))... (-38.28 = -38.36 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:26 2006