Locus 7654

Sequence ID	X_DroMel_CAF1
Location	19,066,269 – 19,066,362
Length	93
Max. P	0.952659

overview

Window 6

Location	19,066,269 – 19,066,362
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	93.44
Mean single sequence MFE	-34.50
Consensus MFE	-30.90
Energy contribution	-31.26
Covariance contribution	0.36
Combinations/Pair	1.04
Mean z-score	-1.56
Structure conservation index	0.90
SVM decision value	1.42
SVM RNA-class probability	0.952659
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19066269 93 + 22224390
CAUCCACAGCGCAGGUCUCGGUAAGAUCGGGCAGAUCUCCACUGCCCGCCCAACCGGCGGAUCACCUGGUGCCGCCACCACUGCCCGUUCCCC
........(.((((.....(((.....(((((((.......)))))))....)))((((((((....))).)))))....)))).)....... ( -34.00)
>DroSec_CAF1 17899 93 + 1
CAGCCACAGCGCAGGCCUCGGUAAGAUCGGGCAGAUCCCCACUGCCCGCCCAACCGGCGGAUCACCUGGUGCCGCCACCACUGCCCGUUCCCC
..((....))((((.....(((.....(((((((.......)))))))....)))((((((((....))).)))))....))))......... ( -34.40)
>DroSim_CAF1 19840 93 + 1
CAGCCACAGCGCAGGCCUCGGUAAGAUCGGGCAGAUCCCCACUGCCCGCCCAGCCGGCGGAUCACCUGGUGCCGCCACCACUACCCGUUCCCC
..(((........)))...((((.((((((((((.......))))))(((.....))).))))...(((((....))))).))))........ ( -32.50)
>DroEre_CAF1 18209 93 + 1
CAUCCACAGCGCAGGCCUUGGUAAGAUCGGGCAGAUCCCCACUGCCCGCACAACCGGCGGAUCACCUGGUGCCGCCGCCACUGCCCGUGCCCC
........((((.(((..((((.....(((((((.......))))))).......((((((((....))).)))))))))..))).))))... ( -41.00)
>DroYak_CAF1 18975 93 + 1
CAUCCACAGCACAGGCCCUGGUAAGAUCGGGCCGAUCGCCACUGCCCGCCCAGCCGGCGGAUCAUCUGGUGCCGCCACCACUGCCCGUUCCCC
...(((..((....))..)))...((.(((((.(((((((.(((......)))..))).))))...(((((....)))))..))))).))... ( -30.60)
>consensus
CAUCCACAGCGCAGGCCUCGGUAAGAUCGGGCAGAUCCCCACUGCCCGCCCAACCGGCGGAUCACCUGGUGCCGCCACCACUGCCCGUUCCCC
........(.((((.....(((.....(((((((.......)))))))....)))((((((((....))).)))))....)))).)....... (-30.90 = -31.26 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:25 2006