Locus 7653

Sequence ID	X_DroMel_CAF1
Location	19,066,000 – 19,066,090
Length	90
Max. P	0.543393

overview

Window 5

Location	19,066,000 – 19,066,090
Length	90
Sequences	4
Columns	90
Reading direction	forward
Mean pairwise identity	93.15
Mean single sequence MFE	-28.40
Consensus MFE	-23.74
Energy contribution	-24.11
Covariance contribution	0.38
Combinations/Pair	1.09
Mean z-score	-1.52
Structure conservation index	0.84
SVM decision value	0.02
SVM RNA-class probability	0.543393
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19066000 90 + 22224390
GCCAAGUAUCAACUGCAAGUCCAUGAAAACGGAACCGGAUCAGCUGCUUGGCGCAGUGGCACAUCUUUCAUCUCAAUCCGCAACCGGAUC
((((((((.(..(((....(((.(....).)))..)))....).))))))))((....))...............(((((....))))). ( -21.10)
>DroSec_CAF1 17631 90 + 1
GCCAUGUGUCAACUGCAAGUCCAUGGAAACGGAACCGGAUCAGCUGCUUGGCGCAGUGGCACAUCUUUCAUCUCUGUCCGCAACCGGAUC
(((((((((((((.((..((((..(....)(....)))))..)).).)))))))).))))...............(((((....))))). ( -30.30)
>DroSim_CAF1 19572 90 + 1
GCCAUGUGUCAACUGCAAGUCCAUGGAAACGGAACCGGAUCAGCUGCUUGGCGCAGUGGCACAUCUUUCAUCUCUGUCCGCAACCGGAUC
(((((((((((((.((..((((..(....)(....)))))..)).).)))))))).))))...............(((((....))))). ( -30.30)
>DroYak_CAF1 18718 90 + 1
GCCAAGUGUCAAGUGCAAGUCCGUGAAAACUAAACCGGAUCAGCUGCUUGACGCAGUGGCACAUCUUUCAUCUGCGUCCGCAACCGGAUC
((((.(((((((((((..(((((............)))))..)).)))))))))..))))...............(((((....))))). ( -31.90)
>consensus
GCCAAGUGUCAACUGCAAGUCCAUGAAAACGGAACCGGAUCAGCUGCUUGGCGCAGUGGCACAUCUUUCAUCUCUGUCCGCAACCGGAUC
((((((((((((..((..((((..............))))..))...)))))))).))))...............(((((....))))). (-23.74 = -24.11 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:24 2006