Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,107,263 – 2,107,355 |
Length | 92 |
Max. P | 0.999646 |
Location | 2,107,263 – 2,107,355 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 69.50 |
Mean single sequence MFE | -23.14 |
Consensus MFE | -13.63 |
Energy contribution | -15.41 |
Covariance contribution | 1.78 |
Combinations/Pair | 1.17 |
Mean z-score | -2.38 |
Structure conservation index | 0.59 |
SVM decision value | 3.83 |
SVM RNA-class probability | 0.999646 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2107263 92 - 22224390 UACGCGUAAGUGUGUCCUUAUUGGGAGAAAAG-A-UUCCCUUUCCUUUGAGGCAGGGCCAUGUUCCAAAAACAUACAUACCCGUAUACCCCAAC- ((((.(((.((((((.......(((((.....-.-))))).....((((..(((......)))..)))).)))))).))).)))).........- ( -22.90) >DroSec_CAF1 810 85 - 1 UACGCGUAAGUGUGUCCUUAUUGGG--------A-CUCCUUUUCCUUUGAGGCACUGCCUUGUUCCAAAAACAUACUU-CCCGUAUACCCCAAUA ((((.(.((((((((.....(((((--------(-(............(((((...))))))))))))..))))))))-.))))).......... ( -21.30) >DroEre_CAF1 657 92 - 1 UACGCGUAAGUGUGUCCUUAUUUAAAGGAAUGGGCUUUCUCUCUUUUUAAGGGCAGGCUCCGUUCCAAAAACAUUCUUGCUCGCAUUUCAUA--- ..((.(((((.((((..((.......(((((((((((.((((.......)))).)))).)))))))))..)))).))))).)).........--- ( -25.21) >consensus UACGCGUAAGUGUGUCCUUAUUGGGAG_AA_G_A_UUCCUUUUCCUUUGAGGCAAGGCCAUGUUCCAAAAACAUACUU_CCCGUAUACCCCAA__ ((((.(((((((((((((((..(((((.............)))))..)))))..................)))))))))).)))).......... (-13.63 = -15.41 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:19 2006