Locus 7648

Sequence ID X_DroMel_CAF1
Location 19,060,809 – 19,060,912
Length 103
Max. P 0.596278
window12552

overview

Window 2

Location 19,060,809 – 19,060,912
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 94.95
Mean single sequence MFE -26.56
Consensus MFE -23.10
Energy contribution -23.50
Covariance contribution 0.40
Combinations/Pair 1.13
Mean z-score -1.25
Structure conservation index 0.87
SVM decision value 0.13
SVM RNA-class probability 0.596278
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19060809 103 - 22224390
GAAGACGAAAAAUGCCACAGACAUUUUCGAAAUAUCUGUCAUGGCUGGUGACUACUUGCAUAUGGUACAUAUGGUACAUAAUUGUGCGACGAGCAAUGCGCAA
............(((.(((((.(((.....))).)))))(((.(((.((.........((((((...))))))(((((....))))).)).))).))).))). ( -22.10)
>DroSec_CAF1 12686 103 - 1
GAAGACCAAAAAUGCCACAAACAUUUUCGAAAUGUCUGUCAUGGCUGGUGACUACUUGCAUAUGGUACAUAUGGUACAUAAUUGUGCGACGAGCAAUGCGCAA
............(((.(((.(((((.....))))).)))(((.(((.((.........((((((...))))))(((((....))))).)).))).))).))). ( -21.90)
>DroSim_CAF1 14201 103 - 1
GAAGACCAAAAAUGCCAUAGACAUUUUCGAAAUGUCUGUCAUGGCUGGUGACUACUUGCAUAUGGUACAUAUGCUACAUAAUUGUGCGACGAGCAAUGCGCAA
....((((.....((((((((((((.....)))))))...)))))))))........(((((((...))))))).......(((((((........))))))) ( -27.20)
>DroEre_CAF1 13095 103 - 1
GGAGACCAAAAAUGCCACAGACAUUUUCGAAAUGUCUGUCAUGGCUGUUGACUACUUGCAUAUGGUACAUAUGGCACAUAAUUGUGCGAUGGGCAAUGCGCAA
(....)(((....((((((((((((.....)))))))))...)))..))).......((((...((...(((.(((((....))))).))).)).)))).... ( -30.90)
>DroYak_CAF1 14192 103 - 1
GGAGACCAAAAAUGCCACAGACAUUUUCGAAAUGUCUGUCAUGGCUGGUGACUGCUUGCAUUUGGUACAUAUGGUACAUAAUUGUGCGAUGAGCAAUGCGCAA
....(((((..((((.(((((((((.....)))))))))...(((.(....).))).)))))))))...(((.(((((....))))).))).((.....)).. ( -30.70)
>consensus
GAAGACCAAAAAUGCCACAGACAUUUUCGAAAUGUCUGUCAUGGCUGGUGACUACUUGCAUAUGGUACAUAUGGUACAUAAUUGUGCGACGAGCAAUGCGCAA
............(((.(((((((((.....)))))))))(((.(((.((.........((((((...))))))(((((....))))).)).))).))).))). (-23.10 = -23.50 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:14 2006