| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,060,045 – 19,060,142 |
| Length | 97 |
| Max. P | 0.595059 |
| Location | 19,060,045 – 19,060,142 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 77.39 |
| Mean single sequence MFE | -14.30 |
| Consensus MFE | -10.19 |
| Energy contribution | -9.23 |
| Covariance contribution | -0.96 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.595059 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19060045 97 - 22224390 AUGACACUCGAACUGAGAACAGUAUGC-CCAC-----AAAAAGUGCGAAAGAUAAAAGAUAGAUGAUGAAUUACUCAUAAAUUAUCCAAUCAAAUCUCAAAUC .............(((((.........-((((-----.....))).)...(((....(((((...((((.....))))...)))))..)))...))))).... ( -11.80) >DroSec_CAF1 11926 85 - 1 -------------UGAGAACAGUACGCACUGU-----AAAAAGUGCGAAUGAUGAAAGAUAGAUGACAAAUUACUCAUCAAUUAUCCAAUCAAAUCUCAAAUC -------------(((((......((((((..-----....))))))..((((....(((((((((........)))))...))))..))))..))))).... ( -22.40) >DroSim_CAF1 13435 85 - 1 -------------UGAGAACAGUACGUGCUGU-----AAAAAGUGCGAAUGAUGAAAGAUAGAUGACAAAUUACUCAUAAAUUAUCAAAUCAAAUCUCAAAUC -------------(((((......((..((..-----....))..))..((((....(((((((((........))))...)))))..))))..))))).... ( -17.30) >DroEre_CAF1 12446 101 - 1 CAAA-GCCCAAGCUCAGAACAGUAUGC-CCAAACAGUAAGAAGUGCGAAAGAUGAAAGAUAGAUGACAAAUUACUCGUUAAAUAUCAAGUCAAAUCUGUAAUC ...(-((....)))((((.........-.................(....).(((..((((..((((.........))))..))))...)))..))))..... ( -11.10) >DroYak_CAF1 13441 97 - 1 AUGAGAACCAAACUUAGAACAGUAUGC-CCAC-----AAAAAGUGCGAAUGAUGAAAGAUAGAUGACAAAUGACUCGUAAAUUAUCAAAUCAAAUCUGAAAUC .............(((((.........-((((-----.....))).)..((((....(((((((((........))))...)))))..))))..))))).... ( -8.90) >consensus ___A____C_A_CUGAGAACAGUAUGC_CCAC_____AAAAAGUGCGAAUGAUGAAAGAUAGAUGACAAAUUACUCAUAAAUUAUCAAAUCAAAUCUCAAAUC .............(((((...((((.................))))....(((....((((.((((........))))....))))..)))...))))).... (-10.19 = -9.23 + -0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:11 2006