Locus 7645

Sequence ID X_DroMel_CAF1
Location 19,059,227 – 19,059,328
Length 101
Max. P 0.945502
window12548

overview

Window 8

Location 19,059,227 – 19,059,328
Length 101
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 82.84
Mean single sequence MFE -27.70
Consensus MFE -21.80
Energy contribution -22.55
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -2.18
Structure conservation index 0.79
SVM decision value 1.35
SVM RNA-class probability 0.945502
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19059227 101 + 22224390
AUUUAAAAUAUCAGAUUUAAAUCUUAACUAUACUUGCCCCACUGUGCCGCAGUAACCCACAAGGCAGGUCGCCGGAAUACCGGCCAUCUCCACUCGGGGGA
(((((((........)))))))..............((((((((.....)))).........((.((((.(((((....))))).))))))....)))).. ( -28.20)
>DroSec_CAF1 11081 101 + 1
AUUUGAAAUAUCUGACUUAAAUGUUAACUAUACUUGCCCCACUGUGCCUCAGUAACCCACAAGGCAGGUCGCCGGAAUAACGGCCAUCUCCACUCGGGGUA
.......(((..((((......))))..)))...((((((((((.....)))).........((.((((.((((......)))).))))))....)))))) ( -28.80)
>DroSim_CAF1 12609 101 + 1
ACUUAAAAUAUCUGACUUAAAUGUUAACUAUACUUGCCCCACUGUGCCUCAGUAACCCACAAGGCAGGUCGCCGGAAUAACGGCCAUCUCCACUCGGGGGA
.......(((..((((......))))..))).....((((((((.....)))).........((.((((.((((......)))).))))))....)))).. ( -27.10)
>DroYak_CAF1 12615 79 + 1
-------------GCU----UUGUUGACUAUCCUUGCCCCACUGUGCCUCAGUAACCCACAAGGCAGGUCGCCGGAAUACCGGCGAUCUCCAC-----GGA
-------------...----..........(((.......((((.....)))).........((.((((((((((....))))))))))))..-----))) ( -26.70)
>consensus
AUUUAAAAUAUCUGACUUAAAUGUUAACUAUACUUGCCCCACUGUGCCUCAGUAACCCACAAGGCAGGUCGCCGGAAUAACGGCCAUCUCCACUCGGGGGA
....................................((((((((.....)))).........((.((((.((((......)))).))))))....)))).. (-21.80 = -22.55 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:10 2006