Locus 7644

Sequence ID X_DroMel_CAF1
Location 19,057,891 – 19,057,982
Length 91
Max. P 0.993069
window12546 window12547

overview

Window 6

Location 19,057,891 – 19,057,982
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 88.90
Mean single sequence MFE -19.71
Consensus MFE -13.57
Energy contribution -14.37
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -2.55
Structure conservation index 0.69
SVM decision value 0.57
SVM RNA-class probability 0.784589
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19057891 91 + 22224390
AUGGCUGGCAAUUAACGAGCCGAACCAAACAAUAAAAUAUCUGGCGCGACCAUCGCUUUUGCAGCCACACUUAAUUAUAAUUUAAGUAUCA
.((((((.(((.......((((...................))))(((.....)))..))))))))).((((((.......)))))).... ( -21.81)
>DroSec_CAF1 9713 91 + 1
AUGGCUGGCAAUUAACGAGCCGAACCAAACAAUAAAAUAACUGGCGCGACCAUCGCUUUUGCAGCCACACUUAAUUAUAAUUAAAAUAUCA
.((((((.(((.......((((...................))))(((.....)))..)))))))))........................ ( -18.71)
>DroSim_CAF1 11257 91 + 1
AUGGCUGGCAAUUAACGAGCCGAACCGAACAAUAAAAUAACUGGCGCGACCAUCGCUUUGGCAGCCACACUUAAUUAUAAUUAAAAUAUCA
.((((((.(((.......((((...................))))(((.....))).))).))))))........................ ( -21.21)
>DroEre_CAF1 10351 81 + 1
AUGGCUGGCAAUUAACGAGCCGAACCAAACAAUAAAAUAUCUGGCGCGACCAUCG---------CCAGAUUAA-UUAUACUUCAAAUAUUA
.(((((.(.......).))))).........((((...((((((((.......))---------))))))...-))))............. ( -19.50)
>DroYak_CAF1 11327 91 + 1
AUGGCUGGCAAUUAACGAGCCGAACGAAACAAUAAAAUAUCUGGCGCGACCAUCGCUUUAGCAGCCACACUAAGUCAUAAUUAAAAUAUUA
.((((((.(.........((((...................))))(((.....)))....)))))))........................ ( -17.31)
>consensus
AUGGCUGGCAAUUAACGAGCCGAACCAAACAAUAAAAUAUCUGGCGCGACCAUCGCUUUUGCAGCCACACUUAAUUAUAAUUAAAAUAUCA
.((((((...........((((...................))))(((.....))).....))))))........................ (-13.57 = -14.37 +   0.80)

alignment

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secondary structure

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dotplot

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Window 7

Location 19,057,891 – 19,057,982
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 88.90
Mean single sequence MFE -26.26
Consensus MFE -20.86
Energy contribution -22.86
Covariance contribution 2.00
Combinations/Pair 1.00
Mean z-score -2.78
Structure conservation index 0.79
SVM decision value 2.37
SVM RNA-class probability 0.993069
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19057891 91 - 22224390
UGAUACUUAAAUUAUAAUUAAGUGUGGCUGCAAAAGCGAUGGUCGCGCCAGAUAUUUUAUUGUUUGGUUCGGCUCGUUAAUUGCCAGCCAU
..((((((((.......))))))))((((((((.(((((..((((.((((((((......)))))))).)))))))))..))).))))).. ( -33.90)
>DroSec_CAF1 9713 91 - 1
UGAUAUUUUAAUUAUAAUUAAGUGUGGCUGCAAAAGCGAUGGUCGCGCCAGUUAUUUUAUUGUUUGGUUCGGCUCGUUAAUUGCCAGCCAU
.......................((((((((((.(((((..((((.(((((.((......)).))))).)))))))))..))).))))))) ( -26.20)
>DroSim_CAF1 11257 91 - 1
UGAUAUUUUAAUUAUAAUUAAGUGUGGCUGCCAAAGCGAUGGUCGCGCCAGUUAUUUUAUUGUUCGGUUCGGCUCGUUAAUUGCCAGCCAU
.......................(((((((.((((((((..((((.(((...((......))...))).)))))))))..))).))))))) ( -23.30)
>DroEre_CAF1 10351 81 - 1
UAAUAUUUGAAGUAUAA-UUAAUCUGG---------CGAUGGUCGCGCCAGAUAUUUUAUUGUUUGGUUCGGCUCGUUAAUUGCCAGCCAU
.................-.....((((---------(((((((((.((((((((......)))))))).))))).....)))))))).... ( -25.50)
>DroYak_CAF1 11327 91 - 1
UAAUAUUUUAAUUAUGACUUAGUGUGGCUGCUAAAGCGAUGGUCGCGCCAGAUAUUUUAUUGUUUCGUUCGGCUCGUUAAUUGCCAGCCAU
.......................(((((((.((((((((..((((.((.(((((......))))).)).)))))))))..))).))))))) ( -22.40)
>consensus
UGAUAUUUUAAUUAUAAUUAAGUGUGGCUGCAAAAGCGAUGGUCGCGCCAGAUAUUUUAUUGUUUGGUUCGGCUCGUUAAUUGCCAGCCAU
.......................(((((((...((..((((((((.((((((((......)))))))).)))).))))..))..))))))) (-20.86 = -22.86 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:09 2006