Locus 7643

Sequence ID X_DroMel_CAF1
Location 19,056,235 – 19,056,327
Length 92
Max. P 0.714431
window12545

overview

Window 5

Location 19,056,235 – 19,056,327
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 80.83
Mean single sequence MFE -21.22
Consensus MFE -14.24
Energy contribution -14.28
Covariance contribution 0.04
Combinations/Pair 1.07
Mean z-score -1.78
Structure conservation index 0.67
SVM decision value 0.38
SVM RNA-class probability 0.714431
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19056235 92 + 22224390
GAGCCAGAAAAUAUUAUGCCUAAGUGUAAGUAUUACACACAUCCAAUUGGGUGGCUCGGUUUGUUCAGUUAGCUCAGUUCAGUUAACUCAGU
(((((..................(((((.....)))))..((((....))))))))).........((((((((......)))))))).... ( -23.60)
>DroSec_CAF1 8114 74 + 1
GAGCCAGAAAAUAGUAUGUCUAAGUGUAUGUAUUACACACAUCCAAUUGGGUGGC------------------UCAGUUCAGUUAACUCAGU
(((((..................(((((.....)))))..((((....)))))))------------------))................. ( -18.10)
>DroSim_CAF1 9660 74 + 1
GAGCCAGAAAAUAUUAUGGCUAAGUGUAUGUAUUACACACAUCCAAUUGGGUGGC------------------UCAGUUCGGUUAACUCAGU
.(((((..........)))))..(((((.....))))).(((((....)))))((------------------(.((((.....)))).))) ( -20.00)
>DroEre_CAF1 8779 87 + 1
GAGCCAGAAAAUAUUAUGGCUAAGUGUAAGUAUUACACACAUCCAAUUGGGUGGCUCGGCUGGUUCAGUUU-----GUUCAGUUUUCUCAGU
(((((((.........((((...(((((.....))))).(((((....))))))).)).))))))).....-----................ ( -22.30)
>DroYak_CAF1 9555 78 + 1
GAGCCAGAAAAUAUUAUGGCUAAGUGUAUGUAUUACACACAUCCAAUUGGGUGGCU---------CAGUUU-----GCCCAGUUAACUCUGU
.(((((..........)))))..(((((.....)))))......(((((((..(..---------....).-----.)))))))........ ( -22.10)
>consensus
GAGCCAGAAAAUAUUAUGGCUAAGUGUAUGUAUUACACACAUCCAAUUGGGUGGCU_________CAGUU___UCAGUUCAGUUAACUCAGU
((((...................(((((.....))))).(((((....))))).......................))))............ (-14.24 = -14.28 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:07 2006