| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,055,669 – 19,055,759 |
| Length | 90 |
| Max. P | 0.840253 |
| Location | 19,055,669 – 19,055,759 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 77.96 |
| Mean single sequence MFE | -19.98 |
| Consensus MFE | -14.38 |
| Energy contribution | -15.88 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.840253 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19055669 90 - 22224390 CGUUGAAGUAUCUA---AA-AAAAGAAGCUGUCCCAGUUUCUGAGGUAAUAAAGCACCUAUUACUUCUUCAUUGUUAAACUGAAGUUGAACGAG ...((((.......---..-...((((((((...))))))))(((((((((.......)))))))))))))(((((.(((....))).))))). ( -20.60) >DroSec_CAF1 7583 89 - 1 CGUUGAAGUAUCUC---AA-ACAAGAAGCUGGCCCAGUUUCUGAGGUAAUAAAGCACCCAUUACUUCUGCAUUGUUAAACU-AAGUUUAACGAG .((.((((((....---..-...((((((((...))))))))(.(((........))))..)))))).)).(((((((((.-..))))))))). ( -22.90) >DroSim_CAF1 9122 92 - 1 CGUUAAAGUACAUCGUUAA-ACAAGAAGCUGGCCCAGUUUCUGAGGUAAUAAAGCACCCAUUACUUUUGGAUUGUUAAACU-AAGUUUAACGAG ............(((((((-((.((((((((...))))))))..........((((.(((.......)))..)))).....-..))))))))). ( -21.90) >DroEre_CAF1 8195 79 - 1 CGCUGAAGUAGCCC---AACGAAAAAAGCUGACCCAGUUUCUGUGGUUAAAUAGCA-----------UCUAUUGUUACACU-AAGUUUAACAAA .((((...(((((.---.(((....((((((...)))))).))))))))..)))).-----------....((((((.((.-..)).)))))). ( -14.50) >consensus CGUUGAAGUAUCUC___AA_AAAAGAAGCUGGCCCAGUUUCUGAGGUAAUAAAGCACCCAUUACUUCUGCAUUGUUAAACU_AAGUUUAACGAG .(((....((((((.........((((((((...))))))))))))))....)))................(((((((((....))))))))). (-14.38 = -15.88 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:07 2006