| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,053,656 – 19,053,768 |
| Length | 112 |
| Max. P | 0.663496 |
| Location | 19,053,656 – 19,053,768 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 81.12 |
| Mean single sequence MFE | -30.56 |
| Consensus MFE | -18.52 |
| Energy contribution | -17.96 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.663496 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19053656 112 + 22224390 AUUGAGGAAAUCUUCAGACAAACUUUCAAGAUGAGGUGGAGAAAUGGAAUUGACACACUUAAGGUA----GCAUUUUAAGCAAUCAGAUUGGCUUGCCAGGUGUCAUAAUCAUCAG .((((((....))))))............(((((.....(....).....((((((......(((.----((.......)).)))...((((....))))))))))...))))).. ( -23.40) >DroSec_CAF1 5473 111 + 1 AUUGAGGAAAUCUUCGGA-AAACUUUCCAGAUGAGGUGGGAACAUGGAAUUGACACACUUAAGGUA----GCCGUUUGAGCAAUCAGAUUGGCUGGCCAGGUGUCAUAAUCAUCAG ...((((....))))(((-(....)))).(((((.(((....))).....((((((.((...((((----(((((((((....))))).))))).)))))))))))...))))).. ( -38.30) >DroSim_CAF1 6825 100 + 1 AUUGAGGAAAUCUUCGGA-AAACUUUCCAGAUG-----------UGGAAUUGACACACUUAAGGUA----GCCUUUUGAGCAAUCUGAUUGGCUGGCCAGGUGUCAUAAUCAUCAG ...((((....))))(((-(....)))).((((-----------......((((((.((...((((----(((..((((....)).))..)))).)))))))))))....)))).. ( -30.20) >DroEre_CAF1 6315 111 + 1 AUUGAGGAAAUCUUCAGA-AAACUUUCCUGACUAGGUGGGGAAAAGGAAUUGGCACACUGAGGGUG----GCCAUUUGAGCCACCAGAUUGACUUGCCAAGUGCCACAAUCAUCAG .((((((....)))))).-....((((((.((...)).)))))).((..((((((...(((.((((----(((....).))))))...)))...))))))...))........... ( -34.40) >DroYak_CAF1 6636 107 + 1 AUUGAGGAAAUCUUCAGA-AAACUUUCCAGAU--------GAAAGGGAAUUGGCACUCUUGAGGCAGCCAGCCACUUAAGCAAUCAGAUUGACUGGCCAAGUGUCAUAAUCAUCGG .((((((....)))))).-.......((.(((--------((....((.(((((...((((((((.....)))..)))))....(((.....))))))))...))....))))))) ( -26.50) >consensus AUUGAGGAAAUCUUCAGA_AAACUUUCCAGAUGAGGUGG_GAAAUGGAAUUGACACACUUAAGGUA____GCCAUUUGAGCAAUCAGAUUGGCUGGCCAGGUGUCAUAAUCAUCAG .((((((....)))))).......(((((...............))))).((((((.((((((((.....)))..)))))........((((....)))))))))).......... (-18.52 = -17.96 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:06 2006